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来自食纤维梭菌743B的纤维小体支架蛋白CbpC的特性分析

Characterization of the cellulosomal scaffolding protein CbpC from Clostridium cellulovorans 743B.

作者信息

Nakajima Daichi, Shibata Toshiyuki, Tanaka Reiji, Kuroda Kouichi, Ueda Mitsuyoshi, Miyake Hideo

机构信息

Graduate School of Bioresources, Mie University, 1577 Kurimamachiya-cho, Tsu, Mie 514-8507, Japan.

Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.

出版信息

J Biosci Bioeng. 2017 Oct;124(4):376-380. doi: 10.1016/j.jbiosc.2017.04.014. Epub 2017 May 19.

Abstract

Clostridium cellulovorans 743B, an anaerobic and mesophilic bacterium, produces an extracellular enzyme complex called the cellulosome on the cell surface. Recently, we have reported the whole genome sequence of C. cellulovorans, which revealed that a total of 4 cellulosomal scaffolding proteins: CbpA, HbpA, CbpB, and CbpC were encoded in the C. cellulovorans genome. In particular, cbpC encoded a 429-residue polypeptide that includes a carbohydrate-binding module (CBM), an S-layer homology module, and a cohesin. CbpC was also detected in the culture supernatant of C. cellulovorans. Genomic DNA coding for CbpC was subcloned into a pET-22b+ vector in order to express and produce the recombinant protein in Escherichia coli BL21(DE3). Measurement of CbpC adsorption to crystalline cellulose indicated a dissociation constant of 0.60 μM, which is a similar to that of CBM from CbpA. We also subcloned the region encoding xylanase B (XynB) with the dockerin from C. cellulovorans and analyzed the interaction between XynB and CbpC by GST pull-down assay. It was observed that GST-CbpC assembles with XynB to form a minimal cellulosome. The activity of XynB against rice straw tended to be increased in the presence of CbpC. These results showed a synergistic effect on rice straw as a representative cellulosic biomass through the formation of a minimal cellulosome containing XynB bound to CbpC. Thus, our findings provide a foundation for the development of cellulosic biomass saccharification using a minimal cellulosome.

摘要

嗜纤维梭菌743B是一种厌氧嗜温细菌,可在细胞表面产生一种名为纤维小体的细胞外酶复合物。最近,我们报道了嗜纤维梭菌的全基因组序列,结果显示该菌基因组中共编码了4种纤维小体支架蛋白:CbpA、HbpA、CbpB和CbpC。特别是,cbpC编码了一个由429个氨基酸残基组成的多肽,其中包括一个碳水化合物结合模块(CBM)、一个S层同源模块和一个黏连蛋白。在嗜纤维梭菌的培养上清液中也检测到了CbpC。为了在大肠杆菌BL21(DE3)中表达并产生重组蛋白,将编码CbpC的基因组DNA亚克隆到pET-22b+载体中。对CbpC与结晶纤维素吸附的测量表明,其解离常数为0.60 μM,这与CbpA的CBM相似。我们还亚克隆了嗜纤维梭菌中编码木聚糖酶B(XynB)及其dockerin的区域,并通过GST下拉实验分析了XynB与CbpC之间的相互作用。结果发现,GST-CbpC与XynB组装形成了一个最小化的纤维小体。在CbpC存在的情况下,XynB对稻草的活性趋于增加。这些结果表明,通过形成包含与CbpC结合的XynB的最小化纤维小体,对作为代表性纤维素生物质的稻草具有协同作用。因此,我们的研究结果为利用最小化纤维小体开发纤维素生物质糖化技术奠定了基础。

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