Nakajima Daichi, Nagano Akihiko, Shibata Toshiyuki, Tanaka Reiji, Kuroda Kouichi, Ueda Mitsuyoshi, Miyake Hideo
Graduate School of Bioresources, Mie University, 1577 Kurimamachiya-cho, Tsu, Mie 514-8507, Japan.
Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan.
Acta Crystallogr F Struct Biol Commun. 2018 Feb 1;74(Pt 2):113-116. doi: 10.1107/S2053230X18000341. Epub 2018 Jan 26.
Clostridium cellulovorans produces multi-enzyme complexes called cellulosomes capable of efficiently degrading cellulosic biomass. There are three xylanase genes containing a sequence corresponding to a dockerin domain that are necessary for constructing cellulosomes in the genome. Among the xylanases encoded by these genes, xylanase B (XynB) contains a catalytic domain belonging to glycoside hydrolase family 10 and a carbohydrate-binding module (CBM) at the N-terminus, making it a member of CBM family 22. In this study, XynB was cloned, overexpressed, purified and crystallized. XynB was crystallized using the hanging-drop vapour-diffusion method in the presence of 0.2 M sodium acetate trihydrate, 0.1 M Tris-HCl pH 8.5, 32%(w/v) PEG 4000 at 293 K. X-ray diffraction analysis revealed that the crystal diffracted to 1.95 Å resolution and belonged to space group P222, with unit-cell parameters a = 74.28, b = 77.55, c = 88.20 Å, α = β = γ = 90°. The data-evaluation statistics revealed high quality of the collected data, thereby establishing a solid basis for determination of the structure of cellulosomal xylanase from C. cellulovorans.
食纤维梭菌可产生名为纤维小体的多酶复合物,该复合物能够高效降解纤维素生物质。在其基因组中,有三个含有与支架蛋白结构域相对应序列的木聚糖酶基因,这些基因对于构建纤维小体是必需的。在这些基因编码的木聚糖酶中,木聚糖酶B(XynB)含有一个属于糖苷水解酶家族10的催化结构域以及位于N端的一个碳水化合物结合模块(CBM),这使其成为CBM家族22的一员。在本研究中,对XynB进行了克隆、过表达、纯化及结晶。采用悬滴气相扩散法,在含有0.2 M三水合乙酸钠、0.1 M Tris-HCl pH 8.5、32%(w/v)聚乙二醇4000的条件下,于293 K对XynB进行结晶。X射线衍射分析表明,该晶体的衍射分辨率达到1.95 Å,属于空间群P222,晶胞参数为a = 74.28、b = 77.55、c = 88.20 Å,α = β = γ = 90°。数据评估统计结果显示所收集的数据质量很高,从而为确定食纤维梭菌纤维小体木聚糖酶的结构奠定了坚实基础。