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微小RNA-375在肺腺癌中的临床价值及潜在信号通路:基于癌症基因组图谱(TCGA)、基因表达综合数据库(GEO)和生物信息学分析的研究

Clinical Value and Prospective Pathway Signaling of MicroRNA-375 in Lung Adenocarcinoma: A Study Based on the Cancer Genome Atlas (TCGA), Gene Expression Omnibus (GEO) and Bioinformatics Analysis.

作者信息

Gan Ting-Qing, Chen Wen-Jie, Qin Hui, Huang Su-Ning, Yang Li-Hua, Fang Ye-Ying, Pan Lin-Jiang, Li Zu-Yun, Chen Gang

机构信息

Department of Medical Oncology, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, China (mainland).

Department of Pathology, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi, China (mainland).

出版信息

Med Sci Monit. 2017 May 23;23:2453-2464. doi: 10.12659/msm.901460.

Abstract

BACKGROUND Lung adenocarcinoma (LUAD) is the most frequent lung cancer. MicroRNAs (miRNAs) are believed to have fundamental roles in tumorigenesis of LUAD. Although miRNAs are broadly recognized in LUAD, the role of microRNA-375 in LUAD is still not fully elucidated. MATERIAL AND METHODS We evaluated the significance of miR-375 expression in LUAD by using analysis of a public dataset from the Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) database and a literature review. Furthermore, we investigated the biological function of miR-375 by gene ontology enrichment and target prediction analysis. RESULTS MiR-375 expression was significantly higher in LUAD by TCGA data compared to normal lung tissue (p<0.0001). In addition, a common pattern of upregulation for miR-375 in LUAD was found in our review of the literature. A total of 682 genes, both LUAD-related and miR-375-related, were obtained from the analytical integration. Critical pathways were unveiled in the network analysis of the overlaps, such as pentose and glucuronate interconversions, ascorbate and aldarate metabolism, and starch and sucrose metabolism. Furthermore, we identified covert miR-375 associated genes that might participate in LUAD by network analysis, such as FGF2 (fibroblast growth factor 2), PAX6 (paired box 6), and RHOJ. The expression of these three genes were all downregulated in LUAD. Finally, FGF2 was revealed to be negatively correlated with miR-375 in LUAD (r=-0.1821, p=0.0001). CONCLUSIONS Overall, our study provides evidence that miR-375 is essential for the progression of LUAD.

摘要

背景 肺腺癌(LUAD)是最常见的肺癌。微小RNA(miRNA)被认为在LUAD的肿瘤发生中起重要作用。尽管miRNA在LUAD中已被广泛认识,但微小RNA-375在LUAD中的作用仍未完全阐明。

材料与方法 我们通过分析来自癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)的公共数据集以及文献综述,评估了miR-375在LUAD中表达的意义。此外,我们通过基因本体富集和靶标预测分析研究了miR-375的生物学功能。

结果 根据TCGA数据,LUAD中miR-375的表达明显高于正常肺组织(p<0.0001)。此外,在我们的文献综述中发现LUAD中miR-375存在上调的常见模式。通过分析整合共获得682个与LUAD和miR-375相关的基因。在重叠部分的网络分析中揭示了关键途径,如戊糖和葡萄糖醛酸相互转化、抗坏血酸和醛糖代谢以及淀粉和蔗糖代谢。此外,我们通过网络分析确定了可能参与LUAD的潜在miR-375相关基因,如FGF2(成纤维细胞生长因子2)、PAX6(配对盒6)和RHOJ。这三个基因在LUAD中的表达均下调。最后,在LUAD中发现FGF2与miR-375呈负相关(r=-0.1821,p=0.0001)。

结论 总体而言,我们的研究提供了证据表明miR-375对LUAD的进展至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/213e/5448611/f5bc7039365e/medscimonit-23-2453-g001.jpg

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