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荧光假单胞菌SBW25在实验微宇宙中的适应性辐射有助于理解气-液界面生物膜形成的进化生态学和分子生物学。

Adaptive radiation of Pseudomonas fluorescens SBW25 in experimental microcosms provides an understanding of the evolutionary ecology and molecular biology of A-L interface biofilm formation.

作者信息

Koza Anna, Kusmierska Anna, McLaughlin Kimberley, Moshynets Olena, Spiers Andrew J

机构信息

School of Science, Engineering and Technology, Abertay University, Dundee DD1 1HG, UK.

Institute of Molecular Biology and Genetics of the National Academy of Sciences of Ukraine, Kiev 03143, Ukraine.

出版信息

FEMS Microbiol Lett. 2017 Jul 3;364(12). doi: 10.1093/femsle/fnx109.

DOI:10.1093/femsle/fnx109
PMID:28535292
Abstract

Combined experimental evolutionary and molecular biology approaches have been used to investigate the adaptive radiation of Pseudomonas fluorescens SBW25 in static microcosms leading to the colonisation of the air-liquid interface by biofilm-forming mutants such as the Wrinkly Spreader (WS). In these microcosms, the ecosystem engineering of the early wild-type colonists establishes the niche space for subsequent WS evolution and colonisation. Random WS mutations occurring in the developing population that deregulate diguanylate cyclases and c-di-GMP homeostasis result in cellulose-based biofilms at the air-liquid interface. These structures allow Wrinkly Spreaders to intercept O2 diffusing into the liquid column and limit the growth of competitors lower down. As the biofilm matures, competition increasingly occurs between WS lineages, and niche divergence within the biofilm may support further diversification before system failure when the structure finally sinks. A combination of pleiotropic and epistasis effects, as well as secondary mutations, may explain variations in WS phenotype and fitness. Understanding how mutations subvert regulatory networks to express intrinsic genome potential and key innovations providing a selective advantage in novel environments is key to understanding the versatility of bacteria, and how selection and ecological opportunity can rapidly lead to substantive changes in phenotype and in community structure and function.

摘要

结合实验进化和分子生物学方法,研究了荧光假单胞菌SBW25在静态微观世界中的适应性辐射,导致形成生物膜的突变体(如褶皱扩展菌,WS)在气液界面定殖。在这些微观世界中,早期野生型定殖者的生态系统工程为随后的WS进化和定殖建立了生态位空间。发育中的群体中发生的随机WS突变会使二鸟苷酸环化酶和c-di-GMP稳态失调,从而在气液界面形成基于纤维素的生物膜。这些结构使褶皱扩展菌能够拦截扩散到液柱中的氧气,并限制下方竞争者的生长。随着生物膜的成熟,WS谱系之间的竞争日益激烈,生物膜内的生态位分化可能会在结构最终下沉导致系统失效之前支持进一步的多样化。多效性和上位性效应以及二次突变的组合,可能解释了WS表型和适应性的变化。了解突变如何颠覆调控网络以表达内在基因组潜力以及在新环境中提供选择优势的关键创新,是理解细菌多功能性以及选择和生态机会如何迅速导致表型、群落结构和功能发生实质性变化的关键。

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