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大规模荟萃分析描绘了常见银屑病相关变异的遗传结构。

Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants.

机构信息

Department of Dermatology, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.

Department of Biostatistics, Center for Statistical Genetics, University of Michigan, Ann Arbor, Michigan 48109, USA.

出版信息

Nat Commun. 2017 May 24;8:15382. doi: 10.1038/ncomms15382.

Abstract

Psoriasis is a complex disease of skin with a prevalence of about 2%. We conducted the largest meta-analysis of genome-wide association studies (GWAS) for psoriasis to date, including data from eight different Caucasian cohorts, with a combined effective sample size >39,000 individuals. We identified 16 additional psoriasis susceptibility loci achieving genome-wide significance, increasing the number of identified loci to 63 for European-origin individuals. Functional analysis highlighted the roles of interferon signalling and the NFκB cascade, and we showed that the psoriasis signals are enriched in regulatory elements from different T cells (CD8 T-cells and CD4 T-cells including T0, T1 and T17). The identified loci explain ∼28% of the genetic heritability and generate a discriminatory genetic risk score (AUC=0.76 in our sample) that is significantly correlated with age at onset (p=2 × 10). This study provides a comprehensive layout for the genetic architecture of common variants for psoriasis.

摘要

银屑病是一种复杂的皮肤疾病,其患病率约为 2%。我们进行了迄今为止规模最大的银屑病全基因组关联研究(GWAS)荟萃分析,包括来自八个不同白种人队列的数据,合并有效样本量超过 39000 人。我们发现了 16 个额外的银屑病易感基因座,达到全基因组显著水平,使欧洲血统个体的鉴定基因座数量增加到 63 个。功能分析强调了干扰素信号和 NFκB 级联的作用,我们表明银屑病信号在不同 T 细胞(包括 CD8 T 细胞和 CD4 T 细胞,如 T0、T1 和 T17)的调控元件中富集。鉴定的基因座解释了约 28%的遗传可遗传性,并产生了一个具有鉴别力的遗传风险评分(在我们的样本中 AUC=0.76),与发病年龄显著相关(p=2×10)。这项研究为常见银屑病变异的遗传结构提供了一个全面的图谱。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b13/5458077/1df00b5b5f34/ncomms15382-f1.jpg

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