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TET 介导的活性 DNA 去甲基化:机制、功能及其他。

TET-mediated active DNA demethylation: mechanism, function and beyond.

机构信息

Howard Hughes Medical Institute, Boston, Massachusetts 02115, USA.

Program in Cellular and Molecular Medicine, Boston Children's Hospital, WAB-149G, 200 Longwood Avenue, Boston, Massachusetts 02115, USA.

出版信息

Nat Rev Genet. 2017 Sep;18(9):517-534. doi: 10.1038/nrg.2017.33. Epub 2017 May 30.

Abstract

In mammals, DNA methylation in the form of 5-methylcytosine (5mC) can be actively reversed to unmodified cytosine (C) through TET dioxygenase-mediated oxidation of 5mC to 5-hydroxymethylcytosine (5hmC), 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC), followed by replication-dependent dilution or thymine DNA glycosylase (TDG)-dependent base excision repair. In the past few years, biochemical and structural studies have revealed mechanistic insights into how TET and TDG mediate active DNA demethylation. Additionally, many regulatory mechanisms of this process have been identified. Technological advances in mapping and tracing the oxidized forms of 5mC allow further dissection of their functions. Furthermore, the biological functions of active DNA demethylation in various biological contexts have also been revealed. In this Review, we summarize the recent advances and highlight key unanswered questions.

摘要

在哺乳动物中,DNA 甲基化形式的 5-甲基胞嘧啶(5mC)可以通过 TET 双加氧酶介导的 5mC 氧化为 5-羟甲基胞嘧啶(5hmC)、5-甲酰胞嘧啶(5fC)和 5-羧基胞嘧啶(5caC),从而被主动逆转回未修饰的胞嘧啶(C),随后通过复制依赖性稀释或胸腺嘧啶 DNA 糖基化酶(TDG)依赖性碱基切除修复。在过去的几年中,生化和结构研究揭示了 TET 和 TDG 如何介导活性 DNA 去甲基化的机制见解。此外,还确定了许多该过程的调节机制。用于绘制和追踪 5mC 氧化形式的技术进步允许进一步剖析它们的功能。此外,活性 DNA 去甲基化在各种生物背景下的生物学功能也已被揭示。在这篇综述中,我们总结了最近的进展,并强调了关键的未解决问题。

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