Département de biochimie, microbiologie et bio-informatique, Faculté des sciences et de génie, Université Laval, Canada; Centre de recherche de l'Institut universitaire de cardiologie et de pneumologie, Université Laval, Canada.
Département de biochimie, microbiologie et bio-informatique, Faculté des sciences et de génie, Université Laval, Canada; Centre de recherche de l'Institut universitaire de cardiologie et de pneumologie, Université Laval, Canada.
Sci Total Environ. 2017 Dec 1;599-600:2095-2104. doi: 10.1016/j.scitotenv.2017.05.076. Epub 2017 May 25.
Bioaerosols are among the less studied particles in the environment. The lack of standardization in sampling procedures, difficulties related to the effect of sampling processes on the integrity of microorganisms, and challenges associated with the application of environmental microbiology analyses and molecular and culture methods frighten many young scientists. Every microorganism has its own particularities and acts differently when aerosolized in various conditions. Because the air is an extremely biologically diluted environment, it is necessary to concentrate its content before any analysis is performed. Challenges faced when applying molecular methods to air samples reveal the need for a better standardization of approaches for cell and nucleic acid recovery, the choice of genetic markers, and interpretation of data. This paper presents a few of the limits and difficulties tackled when molecular methods are applied to bioaerosols, suggests some improvements by specifying the critical stages that should be considered when studying the microbial ecology of bioaerosols, and provides thoughtful insights on how to overcome the challenges encountered.
生物气溶胶是环境中研究较少的颗粒之一。采样程序缺乏标准化、采样过程对微生物完整性的影响相关的困难,以及与环境微生物学分析以及分子和培养方法应用相关的挑战,这些都令许多年轻科学家望而却步。每个微生物都有其自身的特点,在不同条件下气溶胶化时会表现出不同的行为。由于空气是一种生物极度稀释的环境,因此在进行任何分析之前都需要对其进行浓缩。在将分子方法应用于空气样本时所面临的挑战表明,需要更好地标准化细胞和核酸回收的方法、遗传标记的选择以及数据解释。本文介绍了在将分子方法应用于生物气溶胶时遇到的一些限制和困难,通过指定在研究生物气溶胶微生物生态学时应考虑的关键阶段来提出一些改进建议,并就如何克服遇到的挑战提供了深思熟虑的见解。