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定居性鸣禽灰冠丛鸦(Pomatostomus temporalis)岛屿和大陆种群间的线粒体基因谱系与基因流

MITOCHONDRIAL GENE GENEALOGY AND GENE FLOW AMONG ISLAND AND MAINLAND POPULATIONS OF A SEDENTARY SONGBIRD, THE GREY-CROWNED BABBLER (POMATOSTOMUS TEMPORALIS).

作者信息

Edwards Scott V

机构信息

Division of Biochemistry and Molecular Biology, in the Department of Molecular and Cell Biology, and the Museum of Vertebrate Zoology, University of California, Berkeley, California, 94720, USA.

出版信息

Evolution. 1993 Aug;47(4):1118-1137. doi: 10.1111/j.1558-5646.1993.tb02140.x.

DOI:10.1111/j.1558-5646.1993.tb02140.x
PMID:28564274
Abstract

Distinguishing between ongoing gene flow and purely historical association of populations can be difficult without data on times of population separation and effective population sizes. To help discriminate between these two scenarios, I examined mitochondrial DNA sequence diversity in three geographically close populations of the grey-crowned babbler (Pomatostomus temporalis) separated by water barriers of known age in the Northern Territory, Australia, using the polymerase chain reaction (PCR), direct sequencing, and genealogical methods of inference. PCR primers were designed to obtain sequences from region I, a highly variable segment of the control region. Sequence diversity in all populations was consistent with neutrality. In the population on Melville Island, a Pleistocene land-bridge island, sequence variability is as high as on the mainland and consists of two mitochondrial lineages differing by 2%. Phylogenetic analyses of the sequence variation observed among 44 individuals suggest that the number of times lineages in one population trace back to ancestors of a different population (between-population coalescent events) was too high to be compatible with a model of population divergence solely by drift since rising of the water barriers, implying instead recent or ongoing gene flow across water barriers. Similar estimates of F , the fraction of genetic diversity apportioned among populations, were obtained when calculated using the divergence times of alleles and when estimated from Nm values derived from trees and ranging from 0.29-0.55. Both the phylogenies and patterns of allelic divergence suggest that the population on Melville Island exchanges migrants with both continental populations, although statistical tests indicated that some alternative phylogenies implying restricted gene flow among the populations could not be discounted.

摘要

如果没有种群分离时间和有效种群大小的数据,区分种群间正在进行的基因流动和纯粹的历史关联可能会很困难。为了帮助区分这两种情况,我利用聚合酶链反应(PCR)、直接测序和系谱推断方法,研究了澳大利亚北领地三个地理上相邻、被已知年龄的水屏障隔开的灰冠细尾鹩莺(Pomatostomus temporalis)种群的线粒体DNA序列多样性。设计PCR引物以从区域I(控制区域的一个高度可变片段)获得序列。所有种群的序列多样性都符合中性。在梅尔维尔岛(一个更新世陆桥岛)上的种群中,序列变异性与大陆上的一样高,并且由两个相差2%的线粒体谱系组成。对44个个体中观察到的序列变异进行的系统发育分析表明,一个种群中的谱系追溯到另一个不同种群祖先的次数(种群间合并事件)过高,以至于与水屏障升起后仅由漂变导致种群分化的模型不相符,这意味着最近或正在进行跨越水屏障的基因流动。当使用等位基因的分歧时间计算以及从树中得出的Nm值(范围为0.29 - 0.55)估计时,获得了相似的F值(即分配到种群间的遗传多样性比例)。系统发育和等位基因分歧模式都表明,梅尔维尔岛上的种群与两个大陆种群都有移民交换,尽管统计检验表明,一些暗示种群间基因流动受限的替代系统发育不能被排除。

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