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BamA β桶状结构缝中的极端动力学

Extreme Dynamics in the BamA β-Barrel Seam.

作者信息

Doerner Pamela Arden, Sousa Marcelo C

机构信息

Department of Chemistry and Biochemistry, University of Colorado Boulder , Boulder, Colorado 80309-0596, United States.

出版信息

Biochemistry. 2017 Jun 20;56(24):3142-3149. doi: 10.1021/acs.biochem.7b00281. Epub 2017 Jun 12.

Abstract

BamA is an essential component of the β-barrel assembly machine (BAM) that is responsible for insertion and folding of β-barrel outer membrane proteins (OMPs) in Gram-negative bacteria. BamA is an OMP itself, and its β-barrel transmembrane domain is thought to catalyze OMP insertion and folding, although the molecular mechanism remains poorly understood. Crystal structures of BamA and complementary molecular dynamics simulations have shown that its β-barrel seam (the interface between the first and last barrel strands) is destabilized. This has led to mechanistic models in which the BamA barrel seam functions as a lateral gate that opens and successively accepts β-hairpins from a nascent OMP such that a nascent barrel can bud from BamA. Consistent with this model, disulfide locking of the BamA barrel seam is lethal in Escherichia coli. Here we show that disulfide locking of the BamA barrel has no effect on its ability to catalyze folding of a model OMP into liposomes. However, disulfide trapping experiments indicate that the BamA barrel is highly dynamic in the liposome membranes, with the β-strands at the barrel seam undergoing "register sliding" by more than 14 Å both up and down the membrane. Remarkably, these extreme dynamics were also observed in the BamA barrel in the context of the native E. coli outer membrane. These results are consistent with a model in which the BamA barrel dynamics induce defects in the outer membrane that facilitate insertion of nascent OMPs.

摘要

BamA是β-桶装配机器(BAM)的一个重要组成部分,负责革兰氏阴性菌中外膜β-桶蛋白(OMPs)的插入和折叠。BamA本身就是一种OMP,其β-桶跨膜结构域被认为催化OMP的插入和折叠,尽管分子机制仍知之甚少。BamA的晶体结构和互补的分子动力学模拟表明,其β-桶接缝(第一个和最后一个桶状链之间的界面)不稳定。这导致了一些机制模型,其中BamA桶状接缝充当侧向门,打开并依次接受新生OMP的β-发夹结构,使得新生的桶状结构可以从BamA上萌芽。与该模型一致,BamA桶状接缝的二硫键锁定在大肠杆菌中是致命的。在这里,我们表明BamA桶状结构的二硫键锁定对其催化模型OMP折叠到脂质体中的能力没有影响。然而,二硫键捕获实验表明,BamA桶状结构在脂质体膜中具有高度动态性,桶状接缝处的β链在膜上上下经历了超过14 Å的“对齐滑动”。值得注意的是,在天然大肠杆菌外膜的背景下,BamA桶状结构中也观察到了这些极端动态。这些结果与一个模型一致,即BamA桶状结构的动态性会在外膜中诱导缺陷,从而促进新生OMP的插入。

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