Brindha Sridharan, Vincent Savariar, Velmurugan Devadasan, Ananthakrishnan Dhanabalan, Sundaramurthi Jagadish Chandrabose, Gnanadoss John Joel
Loyola College, Nungambakkam, Chennai 600034, Tamil Nadu, India.
Centre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600025, Tamil Nadu, India.
Med Hypotheses. 2017 Jun;103:39-45. doi: 10.1016/j.mehy.2017.04.005. Epub 2017 Apr 5.
New drugs are urgently needed to cure tuberculosis (TB) in a short period of time without causing any adverse effects since currently used drugs for the treatment of multi drug-resistant TB cause several adverse effects with poor success rate. Therefore, we aimed to prioritize known drugs towards repurposing for TB by employing bioinformatics approach in the present study. A total of 1554 FDA approved drugs were obtained from DrugBank. Serine/threonine-protein kinase, pknB (Rv0014c) of Mycobacterium tuberculosis (Mtb) was selected as the drug target since it involves in several vital functions of the Mtb. All of the 1554 drugs were subjected to molecular docking with pknB. Glide and AutoDock Vina were employed using rigid docking followed by induced fit docking protocol for prioritization of drugs. Out of 14 drugs prioritized, six are suggested as high-confident drugs towards repurposing for TB as they were consistently found within top 10 ranks of both methods, and strongly binding in the active site of the pknB. We also found atorvastatin as one of the high-confident drugs, which has already been demonstrated to be active against Mtb under in vitro conditions by other researchers. Therefore, we propose that the prioritized six high-confident drugs as potential candidates for repurposing for TB and suggest for further experimental studies. We also suggest that the bioinformatics procedure we have employed in this study could be effectively applied for prioritization of drugs for other diseases.
由于目前用于治疗耐多药结核病的药物会引发多种不良反应且成功率低,因此迫切需要能在短时间内治愈结核病且无任何不良反应的新药。所以,在本研究中我们旨在运用生物信息学方法,对已知药物重新用于治疗结核病进行优先级排序。从DrugBank获取了总共1554种美国食品药品监督管理局(FDA)批准的药物。结核分枝杆菌(Mtb)的丝氨酸/苏氨酸蛋白激酶pknB(Rv0014c)被选作药物靶点,因为它参与了Mtb的多种重要功能。这1554种药物全部与pknB进行分子对接。使用Glide和AutoDock Vina进行刚性对接,随后采用诱导契合对接协议对药物进行优先级排序。在优先排序的14种药物中,有6种被建议作为重新用于治疗结核病的高可信度药物,因为它们在两种方法的前10名中都一直被发现,并且在pknB的活性位点有强烈结合。我们还发现阿托伐他汀是高可信度药物之一,其他研究人员已经证明它在体外条件下对Mtb有活性。因此,我们提议将这6种优先排序的高可信度药物作为重新用于治疗结核病的潜在候选药物,并建议进行进一步的实验研究。我们还表明,我们在本研究中采用的生物信息学程序可有效地应用于其他疾病药物的优先级排序。