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用于模拟碳水化合物构象和芳香族相互作用的近似量子化学方法:β-环糊精及其在单层石墨烯片上的吸附

Approximate quantum chemical methods for modelling carbohydrate conformation and aromatic interactions: β-cyclodextrin and its adsorption on a single-layer graphene sheet.

作者信息

Jaiyong Panichakorn, Bryce Richard A

机构信息

Division of Pharmacy and Optometry, School of Health Sciences, Faculty of Biology, Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Oxford Road, Manchester M13 9PL, UK.

出版信息

Phys Chem Chem Phys. 2017 Jun 14;19(23):15346-15355. doi: 10.1039/c7cp02160g.

Abstract

Noncovalent functionalization of graphene by carbohydrates such as β-cyclodextrin (βCD) has the potential to improve graphene dispersibility and its use in biomedical applications. Here we explore the ability of approximate quantum chemical methods to accurately model βCD conformation and its interaction with graphene. We find that DFTB3, SCC-DFTB and PM3CARB-1 methods provide the best agreement with density functional theory (DFT) in calculation of relative energetics of gas-phase βCD conformers; however, the remaining NDDO-based approaches we considered underestimate the stability of the trans,gauche vicinal diol conformation. This diol orientation, corresponding to a clockwise hydrogen bonding arrangement in the glucosyl residue of βCD, is present in the lowest energy βCD conformer. Consequently, for adsorption on graphene of clockwise or counterclockwise hydrogen bonded forms of βCD, calculated with respect to this unbound conformer, the DFTB3 method provides closer agreement with DFT values than PM7 and PM6-DH2 approaches. These findings suggest approximate quantum chemical methods as potentially useful tools to guide the design of carbohydrate-graphene interactions, but also highlights the specific challenge to NDDO-based methods in capturing the relative energetics of carbohydrate hydrogen bond networks.

摘要

通过诸如β-环糊精(βCD)等碳水化合物对石墨烯进行非共价功能化,有可能改善石墨烯的分散性及其在生物医学应用中的用途。在此,我们探索近似量子化学方法准确模拟βCD构象及其与石墨烯相互作用的能力。我们发现,在计算气相βCD构象异构体的相对能量时,DFTB3、SCC-DFTB和PM3CARB-1方法与密度泛函理论(DFT)的一致性最佳;然而,我们考虑的其余基于NDDO的方法低估了反式、gauche邻位二醇构象的稳定性。这种二醇取向对应于βCD葡萄糖基残基中顺时针氢键排列,存在于能量最低的βCD构象异构体中。因此,对于以这种未结合构象异构体为参照计算的顺时针或逆时针氢键形式的βCD在石墨烯上的吸附,DFTB3方法与DFT值的一致性比PM7和PM6-DH2方法更接近。这些发现表明近似量子化学方法可能是指导碳水化合物-石墨烯相互作用设计的有用工具,但也突出了基于NDDO的方法在捕捉碳水化合物氢键网络相对能量方面的特定挑战。

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