School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, United States.
School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, United States.
J Biomed Inform. 2017 Nov;75S:S19-S27. doi: 10.1016/j.jbi.2017.06.006. Epub 2017 Jun 7.
De-identification, or identifying and removing protected health information (PHI) from clinical data, is a critical step in making clinical data available for clinical applications and research. This paper presents a natural language processing system for automatic de-identification of psychiatric notes, which was designed to participate in the 2016 CEGS N-GRID shared task Track 1. The system has a hybrid structure that combines machine leaning techniques and rule-based approaches. The rule-based components exploit the structure of the psychiatric notes as well as characteristic surface patterns of PHI mentions. The machine learning components utilize supervised learning with rich features. In addition, the system performance was boosted with integration of additional data to the training set through domain adaptation. The hybrid system showed overall micro-averaged F-score 90.74 on the test set, second-best among all the participants of the CEGS N-GRID task.
去识别化,或者识别和移除临床数据中的保护健康信息 (PHI),是将临床数据用于临床应用和研究的关键步骤。本文提出了一种自然语言处理系统,用于自动识别精神科病历中的去识别化,该系统旨在参加 2016 年 CEGS N-GRID 共享任务第 1 轨道。该系统具有混合结构,结合了机器学习技术和基于规则的方法。基于规则的组件利用精神科病历的结构以及 PHI 提及的特征表面模式。机器学习组件利用带有丰富特征的监督学习。此外,通过通过域自适应将额外的数据集成到训练集中,系统性能得到了提升。混合系统在测试集上的整体微观平均 F1 得分为 90.74,在 CEGS N-GRID 任务的所有参与者中排名第二。
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