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林奈生殖组织分化的转录组分析

Transcriptome analysis of reproductive tissue differentiation in Linn.

作者信息

Govender Nisha, Senan Siju, Mohamed-Hussein Zeti-Azura, Ratnam Wickneswari

机构信息

School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.

Center for Bioinformatics Research, Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Selangor, Malaysia.

出版信息

Genom Data. 2017 May 15;13:11-14. doi: 10.1016/j.gdata.2017.05.008. eCollection 2017 Sep.

DOI:10.1016/j.gdata.2017.05.008
PMID:28626637
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5460744/
Abstract

Shoot and inflorescence are central physiological and developmental tissues of plants. Flowering is one of the most important agronomic traits for improvement of crop yield. To analyze the vegetative to reproductive tissue transition in , gene expression profiles were generated from shoot and inflorescence tissues. RNA isolated from both tissues was sequenced using the Ilumina HiSeq 2500 platform. Differential gene expression analysis identified key biological processes associated with vegetative to reproductive tissue transition. The present data for may inform the design of breeding strategies particularly with respect to reproductive tissue transition. The raw data of this study has been deposited in the NCBI's Sequence Read Archive (SRA) database with the accession number SRP090662.

摘要

茎尖和花序是植物核心的生理和发育组织。开花是提高作物产量的最重要农艺性状之一。为了分析[植物名称未给出]营养组织向生殖组织的转变,从茎尖和花序组织生成了基因表达谱。从这两种组织中分离的RNA使用Illumina HiSeq 2500平台进行测序。差异基因表达分析确定了与营养组织向生殖组织转变相关的关键生物学过程。[植物名称未给出]的当前数据可能为育种策略的设计提供信息,特别是关于生殖组织转变方面。本研究的原始数据已存入NCBI的序列读取存档(SRA)数据库,登录号为SRP090662。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cb9/5460744/16a0c7e62ea4/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cb9/5460744/a67d5659cd0f/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cb9/5460744/16a0c7e62ea4/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cb9/5460744/a67d5659cd0f/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0cb9/5460744/16a0c7e62ea4/gr2.jpg

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本文引用的文献

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Genetic control of flowering time in woody plants: Roses as an emerging model.木本植物开花时间的遗传控制:玫瑰作为新兴模型
Plant Divers. 2017 Feb 3;39(2):104-110. doi: 10.1016/j.pld.2017.01.004. eCollection 2017 Apr.
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Vegetative phase change and shoot maturation in plants.植物的营养生长阶段转变和茎成熟。
Curr Top Dev Biol. 2013;105:125-52. doi: 10.1016/B978-0-12-396968-2.00005-1.
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WEGO: a web tool for plotting GO annotations.WEGO:一个用于绘制基因本体(GO)注释的网络工具。
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W293-7. doi: 10.1093/nar/gkl031.
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Transition from vegetative to reproductive phase.从营养生长阶段向生殖生长阶段的转变。
Curr Opin Plant Biol. 2001 Feb;4(1):63-8. doi: 10.1016/s1369-5266(00)00137-0.