Ayuso David, Palacios Alicia, Decleva Piero, Martín Fernando
Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain.
Phys Chem Chem Phys. 2017 Aug 2;19(30):19767-19776. doi: 10.1039/c7cp01856h.
The combination of attosecond pump-probe techniques with mass spectrometry methods has recently led to the first experimental demonstration of ultrafast charge dynamics in a biomolecule, the amino acid phenylalanine [Calegari et al., Science, 2014, 346, 336]. Using an extension of the static-exchange density functional theory (DFT) method, the observed dynamics was explained as resulting from the coherent superposition of ionic states produced by the broadband attosecond pulse. Here, we have used the static-exchange DFT method to investigate charge migration induced by attosecond pulses in the glycine molecule. We show that the observed dynamics follows patterns similar to those previously found in phenylalanine, namely that charge fluctuations occur all over the molecule and that they can be explained in terms of a few typical frequencies of the system. We have checked the validity of our approach by explicitly comparing with the photoelectron spectra obtained in synchrotron radiation experiments and with the charge dynamics that follows the removal of an electron from a given molecular orbital, for which fully correlated ab initio results are available in the literature. From this comparison, we conclude that our method provides an accurate description of both the coherent superposition of cationic states generated by the attosecond pulse and its subsequent time evolution. Hence, we expect that the static-exchange DFT method should perform equally well for other medium-size and large molecules, for which the use of fully correlated ab initio methods is not possible.
阿秒泵浦-探测技术与质谱方法的结合,最近首次通过实验证明了生物分子(氨基酸苯丙氨酸)中的超快电荷动力学[卡莱加里等人,《科学》,2014年,第346卷,第336页]。利用静态交换密度泛函理论(DFT)方法的扩展,观察到的动力学被解释为宽带阿秒脉冲产生的离子态的相干叠加所致。在此,我们使用静态交换DFT方法来研究阿秒脉冲在甘氨酸分子中诱导的电荷迁移。我们表明,观察到的动力学遵循与先前在苯丙氨酸中发现的类似模式,即电荷波动在整个分子中发生,并且可以用系统的几个典型频率来解释。我们通过明确地与同步辐射实验中获得的光电子能谱以及从给定分子轨道移除一个电子后的电荷动力学进行比较,检验了我们方法的有效性,对于后者,文献中可获得完全相关的从头算结果。通过这种比较,我们得出结论,我们的方法对阿秒脉冲产生的阳离子态的相干叠加及其随后的时间演化都提供了准确的描述。因此,我们预计静态交换DFT方法对于其他无法使用完全相关从头算方法的中等大小和大分子也应同样适用。