Szefler Beata, Czeleń Przemysław
Department of Physical Chemistry, Faculty of Pharmacy, Collegium Medicum, Nicolaus Copernicus University, Kurpińskiego 5, 85-096, Bydgoszcz, Poland.
J Mol Model. 2017 Jul;23(7):208. doi: 10.1007/s00894-017-3363-3. Epub 2017 Jun 20.
Nicotinamide phosphoribosyl-transferases (NAMPT) are enzymes that play a role in targeting cancer metabolism, while beta lactamases are involved in bacterial resistance to beta-lactam antibiotics. Many protein inhibitors exhibit such property which is often correlated with their cellular potency. In order to understand such a phenomenon, the present article conducts an analysis of the dynamic behavior of complexes formed by the inhibitors, that is indolizine derivatives, with the studied enzymes. Both docking and molecular dynamics led to identification of their interactions and showed the mechanism of inhibition of the two studied enzymes. The differences in the behavior of ligand at the active sites of beta lactamases and nicotinamide phosphoribosyl-transferases are indicated by structural and enthalpy values.
烟酰胺磷酸核糖基转移酶(NAMPT)是在靶向癌症代谢中发挥作用的酶,而β-内酰胺酶则与细菌对β-内酰胺抗生素的耐药性有关。许多蛋白质抑制剂都具有这种特性,这通常与其细胞活性相关。为了理解这种现象,本文对抑制剂(即中氮茚衍生物)与所研究的酶形成的复合物的动态行为进行了分析。对接和分子动力学都导致了它们相互作用的识别,并展示了对两种所研究酶的抑制机制。β-内酰胺酶和烟酰胺磷酸核糖基转移酶活性位点处配体行为的差异通过结构和焓值得以体现。