Suppr超能文献

探索硼酸作为OXA-24/40β-内酰胺酶抑制剂的潜力。

Exploring the potential of boronic acids as inhibitors of OXA-24/40 β-lactamase.

作者信息

Werner Josephine P, Mitchell Joshua M, Taracila Magdalena A, Bonomo Robert A, Powers Rachel A

机构信息

Department of Chemistry, Grand Valley State University, Allendale, Michigan, 49401.

Research Service, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, Ohio, 44106.

出版信息

Protein Sci. 2017 Mar;26(3):515-526. doi: 10.1002/pro.3100. Epub 2017 Feb 23.

Abstract

β-lactam antibiotics are crucial to the management of bacterial infections in the medical community. Due to overuse and misuse, clinically significant bacteria are now resistant to many commercially available antibiotics. The most widespread resistance mechanism to β-lactams is the expression of β-lactamase enzymes. To overcome β-lactamase mediated resistance, inhibitors were designed to inactivate these enzymes. However, current inhibitors (clavulanic acid, tazobactam, and sulbactam) for β-lactamases also contain the characteristic β-lactam ring, making them susceptible to resistance mechanisms employed by bacteria. This presents a critical need for novel, non-β-lactam inhibitors that can circumvent these resistance mechanisms. The carbapenem-hydrolyzing class D β-lactamases (CHDLs) are of particular concern, given that they efficiently hydrolyze potent carbapenem antibiotics. Unfortunately, these enzymes are not inhibited by clinically available β-lactamase inhibitors, nor are they effectively inhibited by the newest, non-β-lactam inhibitor, avibactam. Boronic acids are known transition state analog inhibitors of class A and C β-lactamases, and are not extensively characterized as inhibitors of class D β-lactamases. Importantly, boronic acids provide a novel way to potentially inhibit class D β-lactamases. Sixteen boronic acids were selected and tested for inhibition of the CHDL OXA-24/40. Several compounds were identified as effective inhibitors of OXA-24/40, with K values as low as 5 μM. The X-ray crystal structures of OXA-24/40 in complex with BA3, BA4, BA8, and BA16 were determined and revealed the importance of interactions with hydrophobic residues Tyr112 and Trp115. These boronic acids serve as progenitors in optimization efforts of a novel series of inhibitors for class D β-lactamases.

摘要

β-内酰胺类抗生素在医学界对细菌感染的治疗中至关重要。由于过度使用和滥用,临床上具有重要意义的细菌现在对许多市售抗生素产生了耐药性。对β-内酰胺类最广泛的耐药机制是β-内酰胺酶的表达。为了克服β-内酰胺酶介导的耐药性,人们设计了抑制剂来使这些酶失活。然而,目前用于β-内酰胺酶的抑制剂(克拉维酸、他唑巴坦和舒巴坦)也含有特征性的β-内酰胺环,这使得它们容易受到细菌所采用的耐药机制的影响。这就迫切需要能够规避这些耐药机制的新型非β-内酰胺抑制剂。碳青霉烯水解D类β-内酰胺酶(CHDLs)尤其令人担忧,因为它们能有效水解强效的碳青霉烯类抗生素。不幸的是,这些酶既不被临床可用的β-内酰胺酶抑制剂抑制,也不被最新的非β-内酰胺抑制剂阿维巴坦有效抑制。硼酸是已知的A类和C类β-内酰胺酶的过渡态类似物抑制剂,作为D类β-内酰胺酶的抑制剂尚未得到广泛研究。重要的是,硼酸提供了一种潜在抑制D类β-内酰胺酶的新方法。选择了16种硼酸并测试其对CHDL OXA-24/40的抑制作用。鉴定出几种化合物是OXA-24/40的有效抑制剂,其K值低至5μM。确定了OXA-24/40与BA3、BA4、BA8和BA16复合物的X射线晶体结构,揭示了与疏水残基Tyr112和Trp115相互作用的重要性。这些硼酸可作为新型D类β-内酰胺酶抑制剂系列优化研究的起始物。

相似文献

1
Exploring the potential of boronic acids as inhibitors of OXA-24/40 β-lactamase.
Protein Sci. 2017 Mar;26(3):515-526. doi: 10.1002/pro.3100. Epub 2017 Feb 23.
2
Cyclic Boronates Inhibit All Classes of β-Lactamases.
Antimicrob Agents Chemother. 2017 Mar 24;61(4). doi: 10.1128/AAC.02260-16. Print 2017 Apr.
3
Structure-based enhancement of boronic acid-based inhibitors of AmpC beta-lactamase.
J Med Chem. 1998 Nov 5;41(23):4577-86. doi: 10.1021/jm980343w.
6
Structure-based approach for identification of novel phenylboronic acids as serine-β-lactamase inhibitors.
J Comput Aided Mol Des. 2016 Oct;30(10):851-861. doi: 10.1007/s10822-016-9962-8. Epub 2016 Sep 8.
7
Crystal Structures of KPC-2 and SHV-1 β-Lactamases in Complex with the Boronic Acid Transition State Analog S02030.
Antimicrob Agents Chemother. 2016 Jan 4;60(3):1760-6. doi: 10.1128/AAC.02643-15.
8
Structure-Based Analysis of Boronic Acids as Inhibitors of Acinetobacter-Derived Cephalosporinase-7, a Unique Class C β-Lactamase.
ACS Infect Dis. 2018 Mar 9;4(3):325-336. doi: 10.1021/acsinfecdis.7b00152. Epub 2017 Dec 8.
9
β-Lactamases and β-Lactamase Inhibitors in the 21st Century.
J Mol Biol. 2019 Aug 23;431(18):3472-3500. doi: 10.1016/j.jmb.2019.04.002. Epub 2019 Apr 5.
10
Crystal structures of KPC-2 β-lactamase in complex with 3-nitrophenyl boronic acid and the penam sulfone PSR-3-226.
Antimicrob Agents Chemother. 2012 May;56(5):2713-8. doi: 10.1128/AAC.06099-11. Epub 2012 Feb 13.

引用本文的文献

1
SAND: a comprehensive annotation of class D β-lactamases using structural alignment-based numbering.
Antimicrob Agents Chemother. 2025 Jul 2;69(7):e0015025. doi: 10.1128/aac.00150-25. Epub 2025 May 27.
2
Restoring susceptibility to β-lactam antibiotics in methicillin-resistant Staphylococcus aureus.
Nat Chem Biol. 2025 Apr;21(4):482-489. doi: 10.1038/s41589-024-01688-0. Epub 2024 Jul 26.
5
Cyclic boronates as versatile scaffolds for KPC-2 β-lactamase inhibition.
RSC Med Chem. 2020 Jan 10;11(4):491-496. doi: 10.1039/c9md00557a. eCollection 2020 Apr 1.
6
Structures of FOX-4 Cephamycinase in Complex with Transition-State Analog Inhibitors.
Biomolecules. 2020 Apr 27;10(5):671. doi: 10.3390/biom10050671.
7
Identifying Oxacillinase-48 Carbapenemase Inhibitors Using DNA-Encoded Chemical Libraries.
ACS Infect Dis. 2020 May 8;6(5):1214-1227. doi: 10.1021/acsinfecdis.0c00015. Epub 2020 Mar 25.
8
Considerations and Caveats in Combating ESKAPE Pathogens against Nosocomial Infections.
Adv Sci (Weinh). 2019 Dec 5;7(1):1901872. doi: 10.1002/advs.201901872. eCollection 2020 Jan.
9
Biochemical Activity of Vaborbactam.
Antimicrob Agents Chemother. 2020 Jan 27;64(2). doi: 10.1128/AAC.01935-19.
10
Heteroaryl Phosphonates as Noncovalent Inhibitors of Both Serine- and Metallocarbapenemases.
J Med Chem. 2019 Sep 26;62(18):8480-8496. doi: 10.1021/acs.jmedchem.9b00728. Epub 2019 Sep 13.

本文引用的文献

1
The structure of a doripenem-bound OXA-51 class D β-lactamase variant with enhanced carbapenemase activity.
Protein Sci. 2016 Dec;25(12):2152-2163. doi: 10.1002/pro.3040. Epub 2016 Sep 26.
2
4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine β-Lactamase Inhibitors.
ACS Infect Dis. 2015 Jul 10;1(7):310-6. doi: 10.1021/acsinfecdis.5b00031. Epub 2015 Jun 18.
3
Phase 1 Study of the Safety, Tolerability, and Pharmacokinetics of the β-Lactamase Inhibitor Vaborbactam (RPX7009) in Healthy Adult Subjects.
Antimicrob Agents Chemother. 2016 Sep 23;60(10):6326-32. doi: 10.1128/AAC.00568-16. Print 2016 Oct.
4
Implications of aromatic-aromatic interactions: From protein structures to peptide models.
Protein Sci. 2015 Dec;24(12):1920-33. doi: 10.1002/pro.2814. Epub 2015 Oct 7.
5
Structural Basis for Enhancement of Carbapenemase Activity in the OXA-51 Family of Class D β-Lactamases.
ACS Chem Biol. 2015 Aug 21;10(8):1791-6. doi: 10.1021/acschembio.5b00090. Epub 2015 Jun 12.
6
Discovery of a Cyclic Boronic Acid β-Lactamase Inhibitor (RPX7009) with Utility vs Class A Serine Carbapenemases.
J Med Chem. 2015 May 14;58(9):3682-92. doi: 10.1021/acs.jmedchem.5b00127. Epub 2015 Mar 17.
7
Biochemical and structural analysis of inhibitors targeting the ADC-7 cephalosporinase of Acinetobacter baumannii.
Biochemistry. 2014 Dec 9;53(48):7670-9. doi: 10.1021/bi500887n. Epub 2014 Nov 25.
8
The PDB_REDO server for macromolecular structure model optimization.
IUCrJ. 2014 May 30;1(Pt 4):213-20. doi: 10.1107/S2052252514009324. eCollection 2014 Jul 1.
9
Targeting class A and C serine β-lactamases with a broad-spectrum boronic acid derivative.
J Med Chem. 2014 Jun 26;57(12):5449-58. doi: 10.1021/jm5006572. Epub 2014 Jun 16.
10
Crystal structure of carbapenemase OXA-58 from Acinetobacter baumannii.
Antimicrob Agents Chemother. 2014;58(4):2135-43. doi: 10.1128/AAC.01983-13. Epub 2014 Jan 27.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验