Sedghamiz Elaheh, Nagy Balazs, Jensen Frank
Department of Chemistry, Aarhus University , Langelandsgade 140, DK-8000 Aarhus, Denmark.
Department of Chemistry, University of Isfahan , Isfahan 81746-73441, Iran.
J Chem Theory Comput. 2017 Aug 8;13(8):3715-3721. doi: 10.1021/acs.jctc.7b00296. Epub 2017 Jun 30.
We analyze the conformational dependence of atomic charges and molecular dipole moments for a selection of ∼900 conformations of peptide models of the 20 neutral amino acids. Based on a set of reference density functional theory calculations, we partition the changes into effects due to changes in bond distances, bond angles, and torsional angles and into geometry and charge flux contributions. This allows an assessment of the limitations of fixed charge force fields and indications for how to design improved force fields. The torsional degrees of freedom are the main contribution to conformational changes of atomic charges and molecular dipole moments, but indirect effects due to change in bond distances and angles account for ∼25% of the variation. Charge flux effects dominate for changes in bond distances and are also the main component of the variation in bond angles, while they are ∼25% compared to the geometry variations for torsional degrees of freedom. The geometry and charge flux contributions to some extent produce compensating effects.
我们分析了20种中性氨基酸肽模型约900种构象的原子电荷和分子偶极矩的构象依赖性。基于一组参考密度泛函理论计算,我们将这些变化分为由于键长、键角和扭转角变化引起的效应,以及几何结构和电荷通量贡献。这使得我们能够评估固定电荷力场的局限性,并为如何设计改进的力场提供指导。扭转自由度是原子电荷和分子偶极矩构象变化的主要贡献,但键长和键角变化引起的间接效应占变化的约25%。电荷通量效应在键长变化中占主导地位,也是键角变化的主要组成部分,而与扭转自由度的几何结构变化相比,它们约为25%。几何结构和电荷通量贡献在一定程度上产生补偿效应。