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Telling plant species apart with DNA: from barcodes to genomes.利用DNA区分植物物种:从条形码到基因组。
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Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8019-24. doi: 10.1073/pnas.1503283112. Epub 2015 Jun 1.
3
The long term response of birds to climate change: new results from a cold stage avifauna in northern England.鸟类对气候变化的长期响应:来自英格兰北部寒冷时期鸟类群落的新结果。
PLoS One. 2015 May 20;10(5):e0122617. doi: 10.1371/journal.pone.0122617. eCollection 2015.
4
The genetics of monarch butterfly migration and warning colouration.黑脉金斑蝶迁徙与警戒色的遗传学
Nature. 2014 Oct 16;514(7522):317-21. doi: 10.1038/nature13812. Epub 2014 Oct 1.
5
DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match.DNA 宏条形码与细胞色素 c 氧化酶亚基 I 标记:并非完美匹配。
Biol Lett. 2014 Sep;10(9). doi: 10.1098/rsbl.2014.0562.
6
New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems.新型环境代谢条码分析土壤 DNA:研究过去和现在生态系统的潜力。
Mol Ecol. 2012 Apr;21(8):1821-33. doi: 10.1111/j.1365-294X.2012.05537.x.
7
Conserved primers for DNA barcoding historical and modern samples from New Zealand and Antarctic birds.用于对来自新西兰和南极洲鸟类的历史和现代样本进行 DNA 条形码的保守引物。
Mol Ecol Resour. 2010 May;10(3):431-8. doi: 10.1111/j.1755-0998.2009.02793.x. Epub 2009 Oct 28.
8
Genetic history of an archaic hominin group from Denisova Cave in Siberia.西伯利亚丹尼索瓦洞穴古人类群体的遗传历史。
Nature. 2010 Dec 23;468(7327):1053-60. doi: 10.1038/nature09710.
9
Phylogeny of the mourning wheatear Oenanthe lugens complex.哀悼麦鸡复合体的系统发育。
Mol Phylogenet Evol. 2010 Aug;56(2):758-67. doi: 10.1016/j.ympev.2010.03.022. Epub 2010 Mar 20.
10
A universal DNA mini-barcode for biodiversity analysis.用于生物多样性分析的通用DNA微型条形码。
BMC Genomics. 2008 May 12;9:214. doi: 10.1186/1471-2164-9-214.

利用古代DNA条形码鉴定鸟类遗骸

Identifying Bird Remains Using Ancient DNA Barcoding.

作者信息

Dalén Love, Lagerholm Vendela K, Nylander Johan A A, Barton Nick, Bochenski Zbigniew M, Tomek Teresa, Rudling David, Ericson Per G P, Irestedt Martin, Stewart John R

机构信息

Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Box 50007, SE-10405 Stockholm, Sweden.

Department of Zoology, Stockholm University, SE-10691 Stockholm, Sweden.

出版信息

Genes (Basel). 2017 Jun 21;8(6):169. doi: 10.3390/genes8060169.

DOI:10.3390/genes8060169
PMID:28635635
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5485533/
Abstract

Bird remains that are difficult to identify taxonomically using morphological methods, are common in the palaeontological record. Other types of challenging avian material include artefacts and food items from endangered taxa, as well as remains from aircraft strikes. We here present a DNA-based method that enables taxonomic identification of bird remains, even from material where the DNA is heavily degraded. The method is based on the amplification and sequencing of two short variable parts of the 16S region in the mitochondrial genome. To demonstrate the applicability of this approach, we evaluated the method on a set of Holocene and Late Pleistocene postcranial bird bones from several palaeontological and archaeological sites in Europe with good success.

摘要

在古生物学记录中,很难用形态学方法进行分类鉴定的鸟类遗骸很常见。其他具有挑战性的鸟类材料类型包括濒危类群的人工制品和食物,以及飞机撞击造成的遗骸。我们在此提出一种基于DNA的方法,即使是DNA严重降解的材料,也能对鸟类遗骸进行分类鉴定。该方法基于线粒体基因组中16S区域两个短可变部分的扩增和测序。为了证明这种方法的适用性,我们在欧洲几个古生物学和考古遗址的一组全新世和晚更新世鸟类后肢骨骼上对该方法进行了评估,取得了良好的效果。