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养分供应、细胞内酶丰度与细菌生长之间的联系:来自谷氨酸棒杆菌中心碳代谢的新证据。

The linkage between nutrient supply, intracellular enzyme abundances and bacterial growth: New evidences from the central carbon metabolism of Corynebacterium glutamicum.

机构信息

Institute of Bio- and Geoscience, IBG-1: Biotechnology, Forschungszentrum Juelich, 52425 Juelich, Germany.

Institute of Bio- and Geoscience, IBG-1: Biotechnology, Forschungszentrum Juelich, 52425 Juelich, Germany.

出版信息

J Biotechnol. 2017 Sep 20;258:13-24. doi: 10.1016/j.jbiotec.2017.06.407. Epub 2017 Jun 21.

DOI:10.1016/j.jbiotec.2017.06.407
PMID:28647528
Abstract

Corynebacterium glutamicum serves as important production host for small molecular compounds that are derived from precursor molecules of the central carbon metabolism. It is therefore a well-studied model organism of industrial biotechnology. However, a deeper understanding of the regulatory principles underlying the synthesis of central metabolic enzymes under different environmental conditions as well as its impact on cell growth is still missing. We studied enzyme abundances in C. glutamicum in response to growth on: (i) one limiting carbon source by sampling chemostat and fed-batch cultivations and (ii) changing carbon sources provided in excess by sampling batch cultivations. The targeted quantification of 20 central metabolic enzymes by isotope dilution mass spectrometry revealed that cells maintain stable enzyme concentrations when grown on d-glucose as single carbon and energy source and, most importantly, independent of its availability. By contrast, switching from d-glucose to d-fructose, d-mannose, d-arabitol, acetate, l-lactate or l-glutamate results in highly specific enzyme regulation patterns that can partly be explained by the activity of known transcriptional regulators. Based on these experimental results we propose a simple framework for modeling cell population growth as a nested function of nutrient supply and intracellular enzyme abundances. In summary, our study extends the basis for the formulation of predictive mechanistic models of bacterial growth, applicable in industrial bioprocess development.

摘要

谷氨酸棒杆菌是一种重要的生产宿主,可以从中心碳代谢的前体分子中生产小分子化合物。因此,它是工业生物技术中研究得很好的模式生物。然而,对于不同环境条件下合成中心代谢酶的调控原理及其对细胞生长的影响,我们仍然缺乏更深入的了解。我们研究了谷氨酸棒杆菌在以下条件下生长时的酶丰度:(i)在恒化器和分批补料培养中,以一种限制碳源作为唯一碳源和能源进行采样,(ii)在分批培养中,以过量的不同碳源进行采样。通过同位素稀释质谱法对 20 种中心代谢酶进行的靶向定量分析表明,当以 d-葡萄糖作为唯一的碳源和能源时,细胞能够维持稳定的酶浓度,而且最重要的是,无论其可用性如何,细胞都能维持稳定的酶浓度。相比之下,从 d-葡萄糖切换到 d-果糖、d-甘露糖、d-阿拉伯糖醇、乙酸盐、l-乳酸盐或 l-谷氨酸盐,会导致高度特异性的酶调节模式,这些模式部分可以用已知的转录调节因子的活性来解释。基于这些实验结果,我们提出了一个简单的框架,用于将细胞群体生长建模为营养供应和细胞内酶丰度的嵌套函数。总之,我们的研究扩展了制定细菌生长预测性机制模型的基础,这些模型可应用于工业生物过程的开发。

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