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结合静态和动态方法进行气相分子和团簇的红外光谱计算

Combining Static and Dynamical Approaches for Infrared Spectra Calculations of Gas Phase Molecules and Clusters.

作者信息

Galimberti Daria R, Milani Alberto, Tommasini Matteo, Castiglioni Chiara, Gaigeot Marie-Pierre

机构信息

Dip. Chimica, Materiali, Ing. Chimica "G. Natta", Politecnico di Milano , 20133 Milan, Italy.

LAMBE CNRS UMR8587, Université d'Evry val d'Essonne , 91025 Evry, France.

出版信息

J Chem Theory Comput. 2017 Aug 8;13(8):3802-3813. doi: 10.1021/acs.jctc.7b00471. Epub 2017 Jul 11.

DOI:10.1021/acs.jctc.7b00471
PMID:28654750
Abstract

Four models for the calculation of the IR spectrum of gas phase molecules and clusters from molecular dynamics simulations are presented with the aim to reduce the computational cost of the usual Fourier transform (FT) of the time correlation function of the dipole moment. These models are based on the VDOS, FT of time correlation function of velocities, and atomic polar tensors (APT). The models differ from each other by the number of APTs inserted into the velocities correlation function. Excellent accuracy is achieved by the model adopting a weighted linear combination of a few selected APTs adapted for the rotation of the molecule (model D). The achieved accuracy relates to band positions, band shapes, and band intensities. Depending on the degree of actual dynamics of the molecule, rotational motion, conformational isomerization, and large amplitude motions that can be seen during the finite temperature trajectory, one could also apply one of the other models (models A, B, or C), but with caution. Model D is therefore found simple and accurate, with appealing computational cost and should be systematically applied. Its generalization to condensed phase systems should be straightforward.

摘要

本文提出了四种用于从分子动力学模拟计算气相分子和团簇红外光谱的模型,目的是降低偶极矩时间相关函数通常的傅里叶变换(FT)的计算成本。这些模型基于振动密度谱(VDOS)、速度时间相关函数的傅里叶变换以及原子极化张量(APT)。这些模型的不同之处在于插入到速度相关函数中的APT数量。通过采用适用于分子旋转的几个选定APT的加权线性组合的模型(模型D)实现了极高的精度。所达到的精度涉及谱带位置、谱带形状和谱带强度。根据分子实际动力学的程度、旋转运动、构象异构化以及在有限温度轨迹中可以看到的大幅度运动,也可以谨慎地应用其他模型之一(模型A、B或C)。因此,发现模型D简单且准确,具有吸引人的计算成本,应该系统地应用。将其推广到凝聚相系统应该很直接。

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