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用于药物靶点识别的药效团映射方法:新型噻二唑化合物的化学合成与计算机模拟研究

Pharmacophore Mapping Approach for Drug Target Identification: A Chemical Synthesis and in Silico Study on Novel Thiadiazole Compounds.

作者信息

Meshram Rohan J, Baladhye Vijay B, Gacche Rajesh N, Karale Bhausaheb K, Gaikar Rajendra B

机构信息

Assistant Professor, The Bioinformatics Centre, Savitribai Phule Pune University, Pune, Maharashtra, India.

Professor, Department of Botany, School of Life Sciences, Swami Ramanand Teerth Marathwada University, Nanded, Maharashtra, India.

出版信息

J Clin Diagn Res. 2017 May;11(5):KF01-KF08. doi: 10.7860/JCDR/2017/22761.9925. Epub 2017 May 1.

DOI:10.7860/JCDR/2017/22761.9925
PMID:28658808
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5483710/
Abstract

INTRODUCTION

Compounds containing thiadiazole moiety are cognized to possess with variety of clinical and therapeutic activity. Finding a suitable drug target for newly synthesized compounds remain a major bottle neck in current high throughout medicinal chemistry era.

AIM

To effectively synthesize di substituted thiadiazole compounds and demonstrate drug target identification using an in silico pharmacophore probing approach. Moreover, we also aim to validate the suitability of identified drug target.

MATERIALS AND METHODS

A cost-effective and environmental friendly chemical synthesis scheme for production of di substituted thiadiazole compounds was employed. Target identification was conducted by Pharmmapper software. Validation was accomplished by performing molecular docking and further Molecular Hydrophobic Potential (MHP) analysis.

RESULTS

Pharmacophore probing base approach identified hepatocyte growth factor receptor (c-Met) as a suitable biological target for newly synthesized compounds. Binding free energy values indicate that compound 4b, 4e, 4g and 4h has tremendous potential to be further used as lead compound to design selective inhibitors of c-Met receptor. MHP data from current study supports the possibility that hydrophobic contacts might act as major factor stabilizing thiadiazole- c-Met complex. Moreover, in silico observations of current study are in absolute accordance with previously described in vitro and crystallographic analysis.

CONCLUSION

We demonstrate that thiadiazole compounds synthesized in current investigation has high potential to act in modulation of hepatocyte growth factor receptor (c-Met) activity and thereby act as putative therapeutic agent in cancer therapy.

摘要

引言

含有噻二唑部分的化合物被认为具有多种临床和治疗活性。在当前高通量药物化学时代,为新合成的化合物寻找合适的药物靶点仍然是一个主要瓶颈。

目的

有效合成二取代噻二唑化合物,并使用计算机辅助药效团探测方法证明药物靶点的识别。此外,我们还旨在验证所识别药物靶点的适用性。

材料与方法

采用一种经济高效且环境友好的化学合成方案来生产二取代噻二唑化合物。通过Pharmmapper软件进行靶点识别。通过进行分子对接和进一步的分子疏水势(MHP)分析来完成验证。

结果

基于药效团探测的方法将肝细胞生长因子受体(c-Met)识别为新合成化合物的合适生物靶点。结合自由能值表明化合物4b、4e、4g和4h具有巨大潜力,可进一步用作先导化合物来设计c-Met受体的选择性抑制剂。当前研究的MHP数据支持疏水相互作用可能是稳定噻二唑-c-Met复合物的主要因素这一可能性。此外,当前研究的计算机模拟观察结果与先前描述的体外和晶体学分析完全一致。

结论

我们证明,当前研究中合成的噻二唑化合物具有很高的潜力来调节肝细胞生长因子受体(c-Met)的活性,从而在癌症治疗中作为一种推定的治疗剂发挥作用。

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本文引用的文献

1
Flavonoids as a scaffold for development of novel anti-angiogenic agents: An experimental and computational enquiry.黄酮类化合物作为新型抗血管生成剂开发的支架:一项实验与计算研究。
Arch Biochem Biophys. 2015 Jul;577-578:35-48. doi: 10.1016/j.abb.2015.04.009. Epub 2015 Apr 30.
2
LY2801653 is an orally bioavailable multi-kinase inhibitor with potent activity against MET, MST1R, and other oncoproteins, and displays anti-tumor activities in mouse xenograft models.LY2801653 是一种口服生物可利用的多激酶抑制剂,对 MET、MST1R 和其他癌蛋白具有强大的活性,并在小鼠异种移植模型中显示出抗肿瘤活性。
Invest New Drugs. 2013 Aug;31(4):833-44. doi: 10.1007/s10637-012-9912-9. Epub 2012 Dec 29.
3
LigPlot+: multiple ligand-protein interaction diagrams for drug discovery.LigPlot+:用于药物发现的多种配体-蛋白质相互作用图。
J Chem Inf Model. 2011 Oct 24;51(10):2778-86. doi: 10.1021/ci200227u. Epub 2011 Oct 5.
4
A drug resistance screen using a selective MET inhibitor reveals a spectrum of mutations that partially overlap with activating mutations found in cancer patients.耐药性筛选实验采用了一种选择性 MET 抑制剂,结果发现了一系列与癌症患者中发现的激活突变部分重叠的突变。
Cancer Res. 2011 Aug 1;71(15):5255-64. doi: 10.1158/0008-5472.CAN-10-4433. Epub 2011 Jun 22.
5
Discovery of a novel mode of protein kinase inhibition characterized by the mechanism of inhibition of human mesenchymal-epithelial transition factor (c-Met) protein autophosphorylation by ARQ 197.发现一种新型的蛋白激酶抑制模式,其特征在于通过 ARQ 197 抑制人间质上皮转化因子 (c-Met) 蛋白自身磷酸化的抑制机制。
J Biol Chem. 2011 Jun 10;286(23):20666-76. doi: 10.1074/jbc.M110.213801. Epub 2011 Mar 24.
6
Structural basis for selective small molecule kinase inhibition of activated c-Met.激活的 c-Met 选择性小分子激酶抑制的结构基础。
J Biol Chem. 2011 Apr 1;286(13):11218-25. doi: 10.1074/jbc.M110.204404. Epub 2011 Jan 18.
7
PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach.PharmMapper 服务器:一个使用药效团映射方法进行潜在药物靶点识别的网络服务器。
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W609-14. doi: 10.1093/nar/gkq300. Epub 2010 Apr 29.
8
SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo.SGX523 是一种高度选择性的 MET 受体酪氨酸激酶的 ATP 竞争性抑制剂,具有体内抗肿瘤活性。
Mol Cancer Ther. 2009 Dec;8(12):3181-90. doi: 10.1158/1535-7163.MCT-09-0477.
9
Inhibition of tumor cell growth, invasion, and metastasis by EXEL-2880 (XL880, GSK1363089), a novel inhibitor of HGF and VEGF receptor tyrosine kinases.新型HGF和VEGF受体酪氨酸激酶抑制剂EXEL-2880(XL880,GSK1363089)对肿瘤细胞生长、侵袭和转移的抑制作用
Cancer Res. 2009 Oct 15;69(20):8009-16. doi: 10.1158/0008-5472.CAN-08-4889. Epub 2009 Oct 6.
10
PLATINUM: a web tool for analysis of hydrophobic/hydrophilic organization of biomolecular complexes.PLATINUM:一种用于分析生物分子复合物疏水/亲水结构的网络工具。
Bioinformatics. 2009 May 1;25(9):1201-2. doi: 10.1093/bioinformatics/btp111. Epub 2009 Feb 25.