Woudenberg J H C, Hanse B, van Leeuwen G C M, Groenewald J Z, Crous P W
Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.
IRS, P.O. Box 32, 4600 AA Bergen op Zoom, The Netherlands.
Stud Mycol. 2017 Jun;87:77-103. doi: 10.1016/j.simyco.2017.06.001. Epub 2017 Jun 6.
In 2007 a new leaf spot disease of (sugar beet) spread through the Netherlands. Attempts to identify this destructive sp. in sugar beet led to a phylogenetic revision of the genus. The name has been recommended for use over that of its sexual morph, , which is polyphyletic. forms a well-defined monophyletic genus in the (), but lacks an up-to-date phylogeny. To address this issue, the internal transcribed spacer 1 and 2 and intervening 5.8S nr DNA (ITS) of all available and isolates from the CBS culture collection of the Westerdijk Institute (N = 418), and from 23 freshly collected isolates obtained from sugar beet and related hosts, were sequenced to construct an overview phylogeny (N = 350). Based on their phylogenetic informativeness, parts of the protein-coding genes calmodulin and glyceraldehyde-3-phosphate dehydrogenase were also sequenced for a subset of isolates (N = 149). This resulted in a multi-gene phylogeny of the genus containing 28 species-clades, of which five were found to represent new species. The majority of the sugar beet isolates, including isolates from the Netherlands, Germany and the UK, clustered together in a species clade for which the name was recently proposed. Morphological studies were performed to describe the new species. Twenty-two names were reduced to synonymy, and two new combinations proposed. Three epitypes, one lectotype and two neotypes were also designated in order to create a uniform taxonomy for .
2007年,一种新的甜菜叶斑病在荷兰蔓延。对甜菜中这种具有破坏性的病菌进行鉴定的尝试导致了该属系统发育的修订。已建议使用该病菌的名称,而非其有性型的名称,因为后者是多系的。该病菌在座囊菌纲中形成了一个定义明确的单系属,但缺乏最新的系统发育研究。为解决这一问题,对来自韦斯特戴克研究所CBS培养物保藏中心(N = 418)以及从甜菜和相关寄主中新鲜采集的23个分离株的所有可用病菌和病菌分离株的内部转录间隔区1和2以及居间的5.8S核糖体DNA(ITS)进行了测序,以构建一个总体系统发育图谱(N = 350)。基于其系统发育信息性,还对一部分分离株(N = 149)的蛋白质编码基因钙调蛋白和甘油醛-3-磷酸脱氢酶进行了测序。这产生了一个包含28个物种分支的病菌属多基因系统发育图谱,其中有5个被发现代表新物种。对新物种进行了形态学研究。22个名称被归为同义词,并提出了两个新组合。还指定了三个后选模式、一个选模式和两个新模式,以便为该病菌创建统一的分类法。