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神经肌肉疾病分子遗传学诊断的快速发展。

The rapid evolution of molecular genetic diagnostics in neuromuscular diseases.

作者信息

Volk Alexander E, Kubisch Christian

机构信息

Institute of Human Genetics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.

出版信息

Curr Opin Neurol. 2017 Oct;30(5):523-528. doi: 10.1097/WCO.0000000000000478.

Abstract

PURPOSE OF REVIEW

The development of massively parallel sequencing (MPS) has revolutionized molecular genetic diagnostics in monogenic disorders. The present review gives a brief overview of different MPS-based approaches used in clinical diagnostics of neuromuscular disorders (NMDs) and highlights their advantages and limitations.

RECENT FINDINGS

MPS-based approaches like gene panel sequencing, (whole) exome sequencing, (whole) genome sequencing, and RNA sequencing have been used to identify the genetic cause in NMDs. Although gene panel sequencing has evolved as a standard test for heterogeneous diseases, it is still debated, mainly because of financial issues and unsolved problems of variant interpretation, whether genome sequencing (and to a lesser extent also exome sequencing) of single patients can already be regarded as routine diagnostics. However, it has been shown that the inclusion of parents and additional family members often leads to a substantial increase in the diagnostic yield in exome-wide/genome-wide MPS approaches. In addition, MPS-based RNA sequencing just enters the research and diagnostic scene.

SUMMARY

Next-generation sequencing increasingly enables the detection of the genetic cause in highly heterogeneous diseases like NMDs in an efficient and affordable way. Gene panel sequencing and family-based exome sequencing have been proven as potent and cost-efficient diagnostic tools. Although clinical validation and interpretation of genome sequencing is still challenging, diagnostic RNA sequencing represents a promising tool to bypass some hurdles of diagnostics using genomic DNA.

摘要

综述目的

大规模平行测序(MPS)技术的发展彻底改变了单基因疾病的分子遗传学诊断。本综述简要概述了用于神经肌肉疾病(NMD)临床诊断的不同基于MPS的方法,并强调了它们的优点和局限性。

最新发现

基于MPS的方法,如基因panel测序、(全)外显子组测序、(全)基因组测序和RNA测序,已被用于确定NMD的遗传病因。尽管基因panel测序已发展成为异质性疾病的标准检测方法,但对于单例患者的基因组测序(以及程度较轻的外显子组测序)是否已可被视为常规诊断,仍存在争议,主要原因是财务问题和变异解读的未解决问题。然而,研究表明,纳入父母和其他家庭成员通常会使外显子组范围/基因组范围的MPS方法的诊断率大幅提高。此外,基于MPS的RNA测序刚刚进入研究和诊断领域。

总结

下一代测序越来越能够以高效且经济实惠的方式检测NMD等高度异质性疾病的遗传病因。基因panel测序和基于家系的外显子组测序已被证明是强大且具有成本效益的诊断工具。尽管基因组测序的临床验证和解读仍然具有挑战性,但诊断性RNA测序是一种有前景的工具,可以绕过使用基因组DNA进行诊断的一些障碍。

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