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基于基团加和法的通用计算机算法计算五个热力学分子描述符:普通有机分子的汽化、升华和溶剂化标准焓,熔化熵以及液晶的总相变熵。

Calculation of Five Thermodynamic Molecular Descriptors by Means of a General Computer Algorithm Based on the Group-Additivity Method: Standard Enthalpies of Vaporization, Sublimation and Solvation, and Entropy of Fusion of Ordinary Organic Molecules and Total Phase-Change Entropy of Liquid Crystals.

作者信息

Naef Rudolf, Acree William E

机构信息

Department of Chemistry, University of Basel, Basel 4003, Switzerland.

Department of Chemistry, University of North Texas, Denton, TX 76203, USA.

出版信息

Molecules. 2017 Jun 25;22(7):1059. doi: 10.3390/molecules22071059.

Abstract

The calculation of the standard enthalpies of vaporization, sublimation and solvation of organic molecules is presented using a common computer algorithm on the basis of a group-additivity method. The same algorithm is also shown to enable the calculation of their entropy of fusion as well as the total phase-change entropy of liquid crystals. The present method is based on the complete breakdown of the molecules into their constituting atoms and their immediate neighbourhood; the respective calculations of the contribution of the atomic groups by means of the Gauss-Seidel fitting method is based on experimental data collected from literature. The feasibility of the calculations for each of the mentioned descriptors was verified by means of a 10-fold cross-validation procedure proving the good to high quality of the predicted values for the three mentioned enthalpies and for the entropy of fusion, whereas the predictive quality for the total phase-change entropy of liquid crystals was poor. The goodness of fit (²) and the standard deviation (σ) of the cross-validation calculations for the five descriptors was as follows: 0.9641 and 4.56 kJ/mol ( = 3386 test molecules) for the enthalpy of vaporization, 0.8657 and 11.39 kJ/mol ( = 1791) for the enthalpy of sublimation, 0.9546 and 4.34 kJ/mol ( = 373) for the enthalpy of solvation, 0.8727 and 17.93 J/mol/K ( = 2637) for the entropy of fusion and 0.5804 and 32.79 J/mol/K ( = 2643) for the total phase-change entropy of liquid crystals. The large discrepancy between the results of the two closely related entropies is discussed in detail. Molecules for which both the standard enthalpies of vaporization and sublimation were calculable, enabled the estimation of their standard enthalpy of fusion by simple subtraction of the former from the latter enthalpy. For 990 of them the experimental enthalpy-of-fusion values are also known, allowing their comparison with predictions, yielding a correlation coefficient ² of 0.6066.

摘要

基于基团加和法,使用一种通用的计算机算法给出了有机分子汽化、升华和溶剂化标准焓的计算方法。该算法还能用于计算有机分子的熔化熵以及液晶的总相变熵。本方法基于将分子完全分解为其组成原子及其紧邻原子;通过高斯 - 赛德尔拟合方法对原子基团贡献的计算是基于从文献中收集的实验数据。通过10倍交叉验证程序验证了上述每个描述符计算的可行性,结果表明上述三种焓以及熔化熵的预测值质量良好至高;而液晶总相变熵的预测质量较差。五个描述符交叉验证计算的拟合优度(²)和标准差(σ)如下:汽化焓为0.9641和4.56 kJ/mol( = 3386个测试分子),升华焓为0.8657和11.39 kJ/mol( = 1791),溶剂化焓为0.9546和4.34 kJ/mol( = 373),熔化熵为0.8727和17.93 J/mol/K( = 2637),液晶总相变熵为0.5804和32.79 J/mol/K( = 2643)。详细讨论了两个密切相关熵的结果之间的巨大差异。对于汽化和升华标准焓均可计算的分子,通过从升华焓中简单减去汽化焓即可估算其熔化标准焓。其中990个分子的实验熔化焓值也已知,可将其与预测值进行比较,得到的相关系数²为0.6066。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6a1a/6152037/595e781b52ae/molecules-22-01059-g009.jpg

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