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从南极“冰隧道”分离出的一种嗜冷细菌的特性分析。

Characterization of a cold-active bacterium isolated from the South Pole "Ice Tunnel".

作者信息

Madigan Michael T, Kempher Megan L, Bender Kelly S, Sullivan Paul, Matthew Sattley W, Dohnalkova Alice C, Joye Samantha B

机构信息

Department of Microbiology, Southern Illinois University, Carbondale, IL, 62901, USA.

Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.

出版信息

Extremophiles. 2017 Sep;21(5):891-901. doi: 10.1007/s00792-017-0950-2. Epub 2017 Jul 5.

Abstract

Extremely cold microbial habitats on Earth (those below -30 °C) are rare and have not been surveyed for microbes as extensively as environments in the 0 to -20 °C range. Using cryoprotected growth media incubated at -5 °C, we enriched a cold-active Pseudomonas species from -50 °C ice collected from a utility tunnel for wastewater pipes under Amundsen-Scott South Pole Station, Antarctica. The isolate, strain UC-1, is related to other cold-active Pseudomonas species, most notably P. psychrophila, and grew at -5 °C to +34-37 °C; growth of UC-1 at +3 °C was significantly faster than at +34 °C. Strain UC-1 synthesized a surface exopolymer and high levels of unsaturated fatty acids under cold growth conditions. A 16S rRNA gene diversity screen of the ice sample that yielded strain UC-1 revealed over 1200 operational taxonomic units (OTUs) distributed across eight major classes of Bacteria. Many of the OTUs were Clostridia and Bacteriodia and some of these were probably of wastewater origin. However, a significant fraction of the OTUs were Proteobacteria and Actinobacteria of likely environmental origin. Our results shed light on the lower temperature limits to life and the possible existence of functional microbial communities in ultra-cold environments.

摘要

地球上极端寒冷的微生物栖息地(温度低于-30°C)十分罕见,而且对其中微生物的调查不如对0至-20°C范围内环境中的微生物那么广泛。我们使用在-5°C下培养的含有冷冻保护剂的生长培养基,从南极阿蒙森-斯科特南极站下方污水管道公用隧道采集的-50°C冰块中富集到了一种嗜冷假单胞菌。分离菌株UC-1与其他嗜冷假单胞菌有关,最显著的是嗜冷假单胞菌,它能在-5°C至+34 - 37°C的温度范围内生长;UC-1在+3°C时的生长速度明显快于在+34°C时的生长速度。菌株UC-1在低温生长条件下合成了一种表面胞外聚合物和高水平的不饱和脂肪酸。对产生菌株UC-1的冰样进行的16S rRNA基因多样性筛选显示,有超过1200个可操作分类单元(OTU)分布在细菌的八大主要类别中。许多OTU属于梭菌纲和拟杆菌纲,其中一些可能源自废水。然而,相当一部分OTU是可能来自环境的变形菌门和放线菌门细菌。我们的研究结果揭示了生命的低温极限以及超冷环境中功能性微生物群落的可能存在。

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