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A Simple Method of VNTR D1S80 Locus Allelic Ladder Construction for Capillary Electrophoresis-based Genotyping.

作者信息

Jung Ju Yeon, Kim Su-Ji, Oh Yu-Li, Lim Si-Keun, Lee Yang Han, Hwang Jung Ho

机构信息

Forensic DNA Division, National Forensic Service, 10 Inchun-ro Wonju-si Gangwon-do, 26460, South Korea.

出版信息

J Forensic Sci. 2018 Mar;63(2):526-529. doi: 10.1111/1556-4029.13587. Epub 2017 Jul 10.

DOI:10.1111/1556-4029.13587
PMID:28691776
Abstract

VNTR D1S80 locus genotyping has been largely replaced in forensics by STR. As the statute of limitations on murder cases was abolished in the Republic of Korea in July 2015, the demand for re-analysis of DNA from unresolved murder cases has increased. The National Forensic Service includes several recorded D1S80 genotypes as crucial clues. Here, we re-established the D1S80 analysis system using capillary electrophoresis and confirmed the reproducibility of the system by comparison with the genotypes of eight DNA samples that had been analyzed using PAGE in 2006. In addition, we created an allelic ladder via new methodology using flanking region sequences. A single DNA sample (K562) and seven primers were used for the new ladder, which contains 12 alleles. Although artificial owing to the use of the flanking region rather than repeat unit reduction, the method is rapid and simple, and could be applicable in any laboratory.

摘要

相似文献

1
A Simple Method of VNTR D1S80 Locus Allelic Ladder Construction for Capillary Electrophoresis-based Genotyping.
J Forensic Sci. 2018 Mar;63(2):526-529. doi: 10.1111/1556-4029.13587. Epub 2017 Jul 10.
2
[Rapid DNA identification using 6+1 STR kit and EX-Q20 electrophoresis].使用6+1 STR试剂盒和EX-Q20电泳进行快速DNA鉴定
Fa Yi Xue Za Zhi. 2011 Dec;27(6):444-6.
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Validation of STR typing by capillary electrophoresis.通过毛细管电泳进行STR分型的验证。
J Forensic Sci. 2001 May;46(3):661-76.
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Construction of a library of cloned short tandem repeat (STR) alleles as universal templates for allelic ladder preparation.构建克隆短串联重复(STR)等位基因文库作为等位基因梯制备的通用模板。
Forensic Sci Int Genet. 2014 Sep;12:136-43. doi: 10.1016/j.fsigen.2014.06.005. Epub 2014 Jun 17.
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Analysis of the D1S80 locus by capillary electrophoresis.
Electrophoresis. 1998 Jan;19(1):80-5. doi: 10.1002/elps.1150190115.
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Characterization of a novel D1S80 pseudoallele.
Genet Test. 2000;4(4):393-8. doi: 10.1089/109065700750065153.
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Genotyping of forensic short tandem repeat (STR) systems based on sizing precision in a capillary electrophoresis instrument.基于毛细管电泳仪尺寸精度的法医短串联重复序列(STR)系统基因分型
Electrophoresis. 1998 Jan;19(1):86-93. doi: 10.1002/elps.1150190116.
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Specificity of genetic diversity in D1S80 revealed by SNP-VNTR haplotyping.单核苷酸多态性-可变数目串联重复序列单倍型分析揭示的D1S80基因多样性的特异性
Ann Hum Biol. 2011 Sep;38(5):564-9. doi: 10.3109/03014460.2011.568003. Epub 2011 Apr 5.
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Genetic typing by capillary electrophoresis with the allelic ladder as an absolute standard.
Anal Chem. 1996 Sep 1;68(17):2927-31. doi: 10.1021/ac960346l.
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Multigenerational amplification of a reference ladder for alleles at locus D1S80.
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