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人类 T 细胞对重力变化的动态基因表达反应。

Dynamic gene expression response to altered gravity in human T cells.

机构信息

Institute of Anatomy, Faculty of Medicine, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.

Department of Machine Design, Engineering Design and Product Development, Institute of Mechanical Engineering, Otto-von-Guericke-University Magdeburg, Universitätsplatz 2, 39106, Magdeburg, Germany.

出版信息

Sci Rep. 2017 Jul 12;7(1):5204. doi: 10.1038/s41598-017-05580-x.

Abstract

We investigated the dynamics of immediate and initial gene expression response to different gravitational environments in human Jurkat T lymphocytic cells and compared expression profiles to identify potential gravity-regulated genes and adaptation processes. We used the Affymetrix GeneChip® Human Transcriptome Array 2.0 containing 44,699 protein coding genes and 22,829 non-protein coding genes and performed the experiments during a parabolic flight and a suborbital ballistic rocket mission to cross-validate gravity-regulated gene expression through independent research platforms and different sets of control experiments to exclude other factors than alteration of gravity. We found that gene expression in human T cells rapidly responded to altered gravity in the time frame of 20 s and 5 min. The initial response to microgravity involved mostly regulatory RNAs. We identified three gravity-regulated genes which could be cross-validated in both completely independent experiment missions: ATP6V1A/D, a vacuolar H + -ATPase (V-ATPase) responsible for acidification during bone resorption, IGHD3-3/IGHD3-10, diversity genes of the immunoglobulin heavy-chain locus participating in V(D)J recombination, and LINC00837, a long intergenic non-protein coding RNA. Due to the extensive and rapid alteration of gene expression associated with regulatory RNAs, we conclude that human cells are equipped with a robust and efficient adaptation potential when challenged with altered gravitational environments.

摘要

我们研究了人 Jurkat T 淋巴细胞在不同重力环境下即刻和初始基因表达响应的动力学,并比较了表达谱,以鉴定潜在的受重力调控的基因和适应过程。我们使用了 Affymetrix GeneChip® Human Transcriptome Array 2.0,其中包含 44699 个蛋白编码基因和 22829 个非蛋白编码基因,并在抛物线飞行和亚轨道弹道火箭任务期间进行了实验,通过独立的研究平台和不同的对照实验来交叉验证重力调节基因表达,以排除除重力变化以外的其他因素。我们发现,人 T 细胞中的基因表达在 20 秒和 5 分钟的时间范围内迅速对改变的重力做出响应。对微重力的初始响应主要涉及调节性 RNA。我们鉴定了三个在两个完全独立的实验任务中都可以交叉验证的受重力调节的基因:ATP6V1A/D,一种参与骨吸收酸化的液泡 H+ -ATP 酶(V-ATPase),IGHD3-3/IGHD3-10,免疫球蛋白重链基因座的多样性基因,参与 V(D)J 重组,以及 LINC00837,一种长的基因间非蛋白编码 RNA。由于与调节性 RNA 相关的基因表达的广泛和快速改变,我们得出结论,人类细胞在受到改变的重力环境挑战时具有强大而有效的适应潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/579b/5507981/6f431eecebe7/41598_2017_5580_Fig1_HTML.jpg

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