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端粒酶激活后与心肌梗死相关的关键基因和信号通路的生物信息学分析。

Bioinformatics analysis of key genes and signaling pathways associated with myocardial infarction following telomerase activation.

机构信息

Department of Cardiology, The Second Affiliated Hospital of Harbin Medical University, Harbin, Heilongjiang 150001, P.R. China.

出版信息

Mol Med Rep. 2017 Sep;16(3):2915-2924. doi: 10.3892/mmr.2017.6938. Epub 2017 Jul 6.

Abstract

The present study aimed to identify key genes and signaling pathways associated with myocardial infarction (MI) following telomerase activation, and investigate the possible underlying molecular mechanisms involved in this process. Array data of GSE62973 was downloaded, including 11 samples from the Gene Expression Omnibus database. Differentially expressed genes (DEGs) were analyzed in infarct vs. control, infarct + telomerase vs. control, and infarct + telomerase vs. infarct with the Linear Models for Microarray and RNA‑Seq Data package. Gene Ontology annotation and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis were performed for upregulated and downregulated genes by the Database for Annotation, Visualization and Integrated Discovery. Sub network modules of 3 protein‑protein interaction (PPI) networks were analyzed by Clustering with Overlapping Neighbourhood Expansion, and genes associated with telomerase were analyzed. Proto‑oncogene tyrosine‑protein kinase Src (Src) and proto‑oncogene tyrosine‑protein kinase Fyn (Fyn) were the hub nodes of the greatest degree in the PPI network for the infarct + telomerase vs. control comparison group and infarct + telomerase vs. infarct comparison group, respectively. Olfactory receptor gene family associated genes, including olfactory receptor 10 were significantly enriched in the sub network modules of the 3 comparison groups. In addition, olfactory transduction was a significantly enriched pathway by downregulation of DEGs in the infarct vs. control comparison group, and was additionally a significantly enriched pathway by upregulated DEGs in infarct + telomerase vs. infarct comparison group. Olfactory transduction was a significant pathway enriched by genes associated with telomerase. Telomerase activation may serve an important role in MI, in part, via the regulation of Src, Fyn and olfactory receptor family associated genes.

摘要

本研究旨在鉴定端粒酶激活后与心肌梗死(MI)相关的关键基因和信号通路,并探讨该过程中涉及的潜在分子机制。从基因表达综合数据库中下载了 GSE62973 的数组数据,包括 11 个样本。通过 Linear Models for Microarray and RNA-Seq Data 程序包分析梗死与对照、梗死+端粒酶与对照、梗死+端粒酶与梗死的差异表达基因(DEGs)。通过数据库注释、可视化和综合发现对上调和下调基因进行基因本体论注释和京都基因与基因组百科全书通路富集分析。通过重叠邻域扩展聚类分析 3 个蛋白质-蛋白质相互作用(PPI)网络的子网络模块,并分析与端粒酶相关的基因。原癌基因酪氨酸蛋白激酶Src(Src)和原癌基因酪氨酸蛋白激酶Fyn(Fyn)分别是梗死+端粒酶与对照比较组和梗死+端粒酶与梗死比较组 PPI 网络中最大程度的枢纽节点。嗅觉受体基因家族相关基因,包括嗅觉受体 10,在 3 个比较组的子网络模块中显著富集。此外,嗅觉转导是梗死与对照比较组下调 DEGs 显著富集的途径,也是梗死+端粒酶与梗死比较组上调 DEGs 显著富集的途径。嗅觉转导是与端粒酶相关的基因显著富集的途径。端粒酶的激活可能在 MI 中发挥重要作用,部分是通过调节 Src、Fyn 和嗅觉受体家族相关基因。

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