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用于探索针对恶性疟原虫的潜在抗疟化合物的定量构效关系建模、对接和药物代谢及毒性研究。

QSAR modeling, docking and ADMET studies for exploration of potential anti-malarial compounds against Plasmodium falciparum.

作者信息

Qidwai Tabish

机构信息

Department of Biotechnology, Babasaheb Bhimrao Ambedkar University, Lucknow, 226025, India.

出版信息

In Silico Pharmacol. 2016 Dec;5(1):6. doi: 10.1007/s40203-017-0026-0. Epub 2017 Jul 19.

Abstract

Development of resistance in the Plasmodium falciparum to Artemisinin, the most effective anti-malarial compound, threatens malaria elimination tactics. To gain more efficacious Artemisinin derivatives, QSAR modeling and docking was performed. In the present study, 2D-QSAR model and molecular docking were used to evaluate the Artemisinin compounds and to reveal their binding modes and structural basis of inhibitory activity. Moreover, ADMET-related descriptors have been calculated to predict the pharmacokinetic properties of the effective compounds. The correlation expressed as coefficient of determination (r) and prediction accuracy expressed in the form of cross-validated r (q) of QSAR model are found 0.9687 and 0.9586, respectively. Total 239 descriptors have been included in the study as independent variables. The four chemical descriptors, namely radius of gyration, mominertia Z, SssNH count and SK Average have been found to be well correlated with anti-malarial activities. The model was statistically robust and has good predictive power which could be employed for virtual screening of proposed anti-malarial compounds. QSAR and docking results revealed that studied compounds exhibit good anti-malarial activities and binding affinities. The outcomes could be useful for the design and development of the potent inhibitors which after optimization can be potential therapeutics for malaria.

摘要

恶性疟原虫对最有效的抗疟化合物青蒿素产生耐药性,这对疟疾消除策略构成了威胁。为了获得更有效的青蒿素衍生物,进行了定量构效关系(QSAR)建模和对接研究。在本研究中,使用二维QSAR模型和分子对接来评估青蒿素化合物,并揭示它们的结合模式和抑制活性的结构基础。此外,还计算了与药物代谢动力学相关的描述符,以预测有效化合物的药代动力学性质。发现QSAR模型的决定系数(r)表示的相关性和交叉验证r(q)形式表示的预测准确性分别为0.9687和0.9586。本研究共纳入239个描述符作为自变量。发现回转半径、惯性矩Z、SssNH计数和SK平均值这四个化学描述符与抗疟活性密切相关。该模型具有统计学稳健性和良好的预测能力,可用于虚拟筛选拟议的抗疟化合物。QSAR和对接结果表明,所研究的化合物具有良好的抗疟活性和结合亲和力。这些结果对于设计和开发强效抑制剂可能是有用的,经过优化后这些抑制剂可能成为疟疾的潜在治疗药物。

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本文引用的文献

1
QSAR and docking based semi-synthesis and in vivo evaluation of artemisinin derivatives for antimalarial activity.
Curr Drug Targets. 2014;15(8):753-61. doi: 10.2174/1389450115666140630102711.
2
admetSAR: a comprehensive source and free tool for assessment of chemical ADMET properties.
J Chem Inf Model. 2012 Nov 26;52(11):3099-105. doi: 10.1021/ci300367a. Epub 2012 Nov 1.
4
Synthesis and antimalarial activity of novel dihydro-artemisinin derivatives.
Molecules. 2011 May 30;16(6):4527-38. doi: 10.3390/molecules16064527.
5
A QSAR study of HIV protease inhibitors using theoretical descriptors.
Curr Comput Aided Drug Des. 2010 Dec;6(4):269-82. doi: 10.2174/1573409911006040269.
6
Control of malaria.
Nat Rev Drug Discov. 2010 Jul;9(7):511-2. doi: 10.1038/nrd3207.
7
Artemisinin directly targets malarial mitochondria through its specific mitochondrial activation.
PLoS One. 2010 Mar 8;5(3):e9582. doi: 10.1371/journal.pone.0009582.
8
Falcipain-2 inhibitors.
Med Res Rev. 2010 Jan;30(1):136-67. doi: 10.1002/med.20163.
10
Current perspectives on the mechanism of action of artemisinins.
Int J Parasitol. 2006 Dec;36(14):1427-41. doi: 10.1016/j.ijpara.2006.07.011. Epub 2006 Sep 12.

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