Metabolic & Structural Biology Dept., CSIR-Central Institute of Medicinal & Aromatic Plants, P.O.-CIMAP, Lucknow, 226015, (U.P.), India.
Academy of Scientific & Innovative Research (AcSIR), CSIR-CIMAP Campus, Lucknow, 226015, (U.P.), India.
Sci Rep. 2017 Jul 20;7(1):6019. doi: 10.1038/s41598-017-06131-0.
Global prevalence of breast cancer and its rising frequency makes it a key area of research in drug discovery programs. The research article describes the development of field based 3D-QSAR model based on human breast cancer cell line MCF7 in vitro anticancer activity, which defines the molecular level understanding and regions of structure-activity relationship for triterpene maslinic acid and its analogs. The key features such as average shape, hydrophobic regions and electrostatic patterns of active compounds were mined and mapped to virtually screen potential analogs. Then, field points based descriptors were used to develop a 3D-QSAR model by aligning known active compounds onto identified pharmacophore template. The derived LOO validated PLS regression QSAR model showed acceptable r 0.92 and q 0.75. After screening through Lipinski's rule of five filter for oral bioavailability, ADMET risk filter for drug like features, and synthetic accessibility for chemical synthesis, out of 593 hits, 39 were left top hits. Docking screening was performed through identified potential targets namely, AKR1B10, NR3C1, PTGS2, and HER2. Finally, compound P-902 was identified as best hit. This study, would be of great help in lead identification and optimization for early drug discovery.
全球乳腺癌的患病率及其不断上升的发病率使其成为药物发现计划中一个重要的研究领域。这篇研究文章描述了基于现场的 3D-QSAR 模型的开发,该模型基于人乳腺癌细胞系 MCF7 的体外抗癌活性,定义了三萜酸齐墩果酸及其类似物的分子水平理解和结构-活性关系的区域。挖掘并映射了关键特征,如活性化合物的平均形状、疏水区和静电模式,以虚拟筛选潜在的类似物。然后,通过将已知的活性化合物对齐到确定的药效团模板,使用基于场点的描述符来开发 3D-QSAR 模型。推导的 LOO 验证的 PLS 回归 QSAR 模型显示出可接受的 r 0.92 和 q 0.75。通过对口服生物利用度的五规则筛选、药物特征的 ADMET 风险筛选和化学合成的合成可及性筛选后,从 593 个命中物中,留下了 39 个最佳命中物。通过鉴定出的潜在靶点 AKR1B10、NR3C1、PTGS2 和 HER2 进行对接筛选。最后,鉴定出化合物 P-902 为最佳命中物。这项研究将对早期药物发现中的先导化合物的识别和优化有很大帮助。