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QSAR、对接、ADMET 和系统药理学研究表明,没食子酸衍生物具有抗癌活性。

QSAR, docking, ADMET, and system pharmacology studies on tormentic acid derivatives for anticancer activity.

机构信息

a Metabolic & Structural Biology Department , CSIR-Central Institute of Medicinal & Aromatic Plants , Lucknow , India.

b Academy of Scientific & Innovative Research (AcSIR), CSIR-CIMAP Campus , Lucknow , India.

出版信息

J Biomol Struct Dyn. 2018 Jul;36(9):2373-2390. doi: 10.1080/07391102.2017.1355846. Epub 2017 Aug 2.

Abstract

To explore the anticancer compounds from tormentic acid derivatives, a quantitative structure-activity relationship (QSAR) model was developed by the multiple linear regression methods. The developed QSAR model yielded a high activity-descriptors relationship accuracy of 94% referred by regression coefficient (r = .94) and a high activity prediction accuracy of 91%. The QSAR study indicates that chemical descriptors, chiV5, T_T_Cl_7, T_2_T_4, SsCH3count, and Epsilon3 are significantly correlated with anticancer activity. This validated model was further been used for virtual screening and thus identification of new potential breast cancer inhibitors. Lipinski's rule of five, ADMET risk and synthetic accessibility are used to filter false positive hits. Filtered compounds were then docked to identify the possible target binding pocket, to obtain a set of aligned ligand poses and to prioritize the predicted active compounds. The scrutinized compounds, as well as their metabolites, were predicted and analyzed for different pharmacokinetics parameters such as absorption, distribution, metabolism, excretion, and toxicity. Finally, the top-ranked compound NB-12 was evaluated by system pharmacology approach. Later studied the metabolic networks, disease biomarker networks, pathway maps, drug-target networks and generate significant gene networks. The strategy applied in this research work may act as a framework for rational design of potential anticancer drugs.

摘要

为了从没食子酸衍生物中探索抗癌化合物,采用多元线性回归方法建立了定量构效关系(QSAR)模型。所建立的 QSAR 模型的活性描述符关系准确性很高,回归系数(r =.94)为 94%,活性预测准确性为 91%。QSAR 研究表明,化学描述符 chiV5、T_T_Cl_7、T_2_T_4、SsCH3count 和 Epsilon3 与抗癌活性显著相关。该验证模型进一步用于虚拟筛选,从而鉴定新的潜在乳腺癌抑制剂。使用了 Lipinski 的五规则、ADMET 风险和合成可及性来筛选假阳性命中。然后对接筛选出的化合物,以确定可能的靶结合口袋,获得一组对齐的配体构象,并对预测的活性化合物进行优先级排序。对仔细筛选的化合物及其代谢物进行了不同的药代动力学参数(吸收、分布、代谢、排泄和毒性)的预测和分析。最后,通过系统药理学方法对排名最高的化合物 NB-12 进行了评估。随后研究了代谢网络、疾病生物标志物网络、途径图谱、药物靶点网络和生成重要的基因网络。本研究工作中应用的策略可以作为合理设计潜在抗癌药物的框架。

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