Kazan Institute of Biochemistry and Biophysics , 420111 Kazan, Russian Federation.
Kazan Federal University , 420000 Kazan, Russian Federation.
J Phys Chem B. 2017 Aug 24;121(33):7833-7843. doi: 10.1021/acs.jpcb.7b05654. Epub 2017 Aug 10.
We studied the hydrodynamic behavior of fibrinogen, a blood plasma protein involved in blood clotting, in a broad 0.3-60 mg/mL range of concentration and 5-42 °C temperature using pulsed-field gradient H NMR-diffusometry. Arrhenius plots revealed the activation energy for fibrinogen diffusion E = 21.3 kJ/mol at 1.4 mg/mL and 28.4 kJ/mol at 38 mg/mL. We found a dramatic slowdown in fibrinogen self-diffusion with concentration beginning at 1.7-3.4 mg/mL, which deviated from the standard hard-particle behavior, suggesting a remarkable intermolecular entanglement. This concentration dependence was observed regardless of the absence or presence of the GPRP peptide (inhibitor of fibrin polymerization), and also in samples free of fibrin oligomers. By contrast, diffusivity of fibrinogen variant I-9 with truncated C-terminal portions of the Aα chains was much less concentration-dependent, indicating the importance of intermolecular linkages formed by the αC regions. Theoretical models combined with all-atom molecular dynamics simulations revealed partially bent fibrinogen solution conformations that interpolate between a flexible chain and a rigid rod observed in the crystal. The results obtained illuminate the important role of the αC regions in modulating the fibrinogen molecular shape through formation of weak intermolecular linkages that control the bulk properties of fibrinogen solutions.
我们使用脉冲场梯度 NMR 扩散法研究了纤维蛋白原(一种参与血液凝结的血浆蛋白)在 0.3-60mg/mL 的浓度范围和 5-42°C 的温度范围内的流体动力学行为。Arrhenius 图显示,在 1.4mg/mL 时,纤维蛋白原扩散的活化能 E=21.3kJ/mol,在 38mg/mL 时,E=28.4kJ/mol。我们发现,纤维蛋白原的自扩散随着浓度的增加而显著减慢,从 1.7-3.4mg/mL 开始偏离标准硬球行为,这表明存在显著的分子间缠结。这种浓度依赖性的存在与 GPRP 肽(纤维蛋白聚合抑制剂)的存在与否以及无纤维蛋白低聚物的样品无关。相比之下,截断 Aα 链 C 末端的纤维蛋白原变体 I-9 的扩散性受浓度的影响要小得多,这表明 αC 区域形成的分子间连接的重要性。理论模型结合全原子分子动力学模拟揭示了部分弯曲的纤维蛋白原溶液构象,这些构象在晶体中观察到的柔性链和刚性棒之间插值。所得结果阐明了 αC 区域通过形成控制纤维蛋白原溶液整体性质的弱分子间连接来调节纤维蛋白原分子形状的重要作用。