Departamento de Genética, Facultad de Ciencias, Universidad de Granada, Fuentenueva S/N, 18071, Granada, Spain.
State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Sci Rep. 2017 Jul 27;7(1):6653. doi: 10.1038/s41598-017-07068-0.
We analyze the evolutionary relationships and expression patterns of the large set of genes for chemosensory proteins (CSPs) in the two main pest locusts. We used the available transcriptome and genome data to infer the number of genes using BLAST searches and sequence similarity matrices. Maximum likelihood phylogenies revealed the relationships between these CSPs and CSPs from several arthropods. RNAseq and qPCR allowed associating CSPs to locust phases. Crossing the phylogenetic and expression data allowed us to deduce homologies and conservation of the involvement in the phase change. We confirm that Locusta migratoria has at least 58 CSP gene copies, only five of which lack evidence of expression, and we reveal that Schistocerca gregaria has at least 42 expressed CSP genes. Both species share 21 orthologs, whereas 33 L. migratoria and 15 S. gregaria CSPs seem species-specific. Additional six S. gregaria and four L. migratoria CSPs seem duplications. Although the expression profiles are not especially conserved, seven orthologous CSP pairs share a gregarious over-expression pattern in adult locusts. We thus confirm that the number of locusts' CSPs is large, due to gene duplications during the evolution of Orthoptera, we establish sequence and potential functional homologies, and we highlight specific CSPs that appear to be involved in locust gregariousness either in general or in a species-specific manner.
我们分析了两种主要害虫蝗虫中大套化学感觉蛋白(CSP)基因的进化关系和表达模式。我们使用现有的转录组和基因组数据,通过 BLAST 搜索和序列相似性矩阵推断基因的数量。最大似然系统发育树揭示了这些 CSP 与来自几种节肢动物的 CSP 之间的关系。RNAseq 和 qPCR 允许将 CSP 与蝗虫阶段相关联。将系统发育和表达数据交叉,可以推断出参与相位变化的同源性和保守性。我们证实,飞蝗至少有 58 个 CSP 基因拷贝,其中只有 5 个缺乏表达证据,我们还揭示,沙漠蝗至少有 42 个表达的 CSP 基因。这两个物种共有 21 个直系同源物,而 33 个飞蝗和 15 个沙漠蝗 CSP 似乎是物种特异性的。另外 6 个沙漠蝗和 4 个飞蝗 CSP 似乎是重复的。尽管表达谱不是特别保守,但 7 对直系同源 CSP 对在成虫蝗虫中表现出群居过度表达模式。因此,我们证实由于直翅目进化过程中的基因重复,蝗虫的 CSP 数量很大,我们建立了序列和潜在的功能同源性,并强调了一些特定的 CSP 似乎参与了蝗虫的群居性,无论是普遍的还是特定物种的方式。