从脱水污泥中分离出的 Chryseobacterium limigenitum SUR2（LMG 28734）的基因组序列草图
Draft genome sequence of Chryseobacterium limigenitum SUR2 (LMG 28734) isolated from dehydrated sludge.
作者信息
Škraban Jure, Kyrpides Nikos C, Shapiro Nicole, Whitman William B, Trček Janja
机构信息
University of Maribor, Faculty of Natural Sciences and Mathematics, Department of Biology, Maribor, Slovenia.
DOE Joint Genome Institute, Walnut Creek, CA, USA.
出版信息
Braz J Microbiol. 2018 Jan-Mar;49(1):5-6. doi: 10.1016/j.bjm.2017.03.009. Epub 2017 Jul 18.
The type strain SUR2 of the novel species Chryseobacterium limigenitum was isolated from a dehydrated sludge of the municipal sewage treatment plant in Dogoše near Maribor in Slovenia. The draft genome, with 60 contigs, 4,697,725bp, 34.4% of G+C content, was obtained using the Illumina HiSeq 2500-1 platform. Joint Genome Institute Microbial Genome Annotation Pipeline (MGAP v.4) has identified 4322 protein-coding sequences including resistance genes against arsenic and other heavy metals. In addition, a subclass B3 metallo-β-lactamase, which confers resistance to penicillins, cephalosporins and carbapenems, was also present in the genome. The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species.
新物种生水金黄杆菌的模式菌株SUR2是从斯洛文尼亚马里博尔附近多戈舍市污水处理厂的脱水污泥中分离出来的。使用Illumina HiSeq 2500-1平台获得了草图基因组，该基因组有60个重叠群，4,697,725bp，G+C含量为34.4%。联合基因组研究所微生物基因组注释管道（MGAP v.4）已鉴定出4322个蛋白质编码序列，包括抗砷和其他重金属的抗性基因。此外，基因组中还存在一种B3亚类金属β-内酰胺酶，它赋予对青霉素、头孢菌素和碳青霉烯类的抗性。该基因组序列提供了有关这种新鉴定物种的生物修复潜力和致病特性的重要信息。
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