Program in Physiological Genomics, Center for Hypertension and Personalized Medicine, Department of Physiology and Pharmacology, University of Toledo College of Medicine and Life Sciences, Toledo, Ohio;
Program in Physiological Genomics, Center for Hypertension and Personalized Medicine, Department of Physiology and Pharmacology, University of Toledo College of Medicine and Life Sciences, Toledo, Ohio.
Physiol Genomics. 2017 Sep 1;49(9):484-490. doi: 10.1152/physiolgenomics.00064.2017. Epub 2017 Aug 4.
Circular RNAs (circRNAs) have emerged as an important new class of genomic regulatory molecules contributing to the development of various diseases, but their relevance to the development and progression of hypertension remains largely unknown. A major impediment to begin studying circRNAs in rat models of inherited hypertension is that the rat as a valuable model of human diseases lags far behind the mouse and human in providing knowledge on circRNAs. In this study, a genome-wide circRNA profiling was performed from four rat strains that are widely used in hypertension research: the Dahl salt-sensitive rat (S), the Dahl salt-resistant rat (R), the spontaneously hypertensive rat (SHR), and the Wistar Kyoto rat (WKY). Combined hybridization data obtained from these four strains allowed for the identification of 12,846 circRNAs as being expressed in the rat kidneys. Out of these, 318 and 110 circRNAs were differentially expressed with a fold change > 1.5 ( < 0.05) in S vs. R and SHR vs. WKY, respectively. Among these circRNAs, circRNA/microRNA interaction was predicted since circRNAs are known as microRNA sponges to sequester microRNAs. Several circRNAs were further validated by quantitative real-time PCR. To our knowledge, our study is the primary report of profiling circRNAs in renal tissue and illustrates that circRNAs could be candidate genetic factors controlling blood pressure.
环状 RNA(circRNAs)作为一类重要的基因组调控分子,参与多种疾病的发生发展,但它们与高血压的发生和进展的相关性在很大程度上尚不清楚。在遗传性高血压的大鼠模型中开始研究 circRNAs 的主要障碍是,大鼠作为人类疾病的一种有价值的模型,在提供 circRNAs 知识方面远远落后于小鼠和人类。在这项研究中,对广泛用于高血压研究的四种大鼠品系(Dahl 盐敏感大鼠[S]、Dahl 盐抵抗大鼠[R]、自发性高血压大鼠[SHR]和 Wistar Kyoto 大鼠[WKY])进行了全基因组 circRNA 谱分析。从这四个品系获得的杂交数据组合允许鉴定出 12846 个在大鼠肾脏中表达的 circRNAs。其中,318 个和 110 个 circRNAs 在 S 与 R 之间和 SHR 与 WKY 之间的差异表达倍数 >1.5(<0.05)。在这些 circRNAs 中,由于 circRNAs 作为 microRNA 海绵来隔离 microRNAs,因此预测了 circRNA/microRNA 相互作用。通过定量实时 PCR 进一步验证了几个 circRNAs。据我们所知,我们的研究是首次对肾脏组织中的 circRNAs 进行谱分析,并表明 circRNAs 可能是控制血压的候选遗传因素。