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关于光合作用中放氧复合态结构多型性及其与底物水交换和水氧化机制相关性的理论思考。

Theoretical reflections on the structural polymorphism of the oxygen-evolving complex in the S state and the correlations to substrate water exchange and water oxidation mechanism in photosynthesis.

机构信息

School of Chemistry and Chemical Engineering, Liaoning Normal University, Dalian 116029, People's Republic of China.

School of Chemistry and Chemical Engineering, Liaoning Normal University, Dalian 116029, People's Republic of China.

出版信息

Biochim Biophys Acta Bioenerg. 2017 Oct;1858(10):833-846. doi: 10.1016/j.bbabio.2017.08.001. Epub 2017 Aug 4.

Abstract

The structural polymorphism of the oxygen-evolving complex is of great significance to photosynthetic water oxidation. Employing density functional theory calculations, we have made further advisement on the interconversion mechanism of O5 transfer in the S state, mainly focusing on the potentiality of multi-state reactivity and spin transitions. Then, O5 protonation is proven impossible in S for irreversibility of the interconversion, which serves as an auxiliary judgment for the protonation state of O5 in S. Besides, the structural polymorphism could also be archived by alternative mechanisms involving Mn3 ligand exchange, one of which with Mn3(III) makes sense to substrate water exchange in S, although being irresponsible for the derivations of the observed EPR signals. During the water exchange, high-spin states would prevail to facilitate electron transfer between the ferromagnetically coupled Mn centers. In addition, water exchange in S could account for the closed-cubane structure as the initial form entering S at cryogenic temperatures. With regard to water oxidation, the structural flexibility and variability in both S and S guarantee smooth W2-O5 coupling in S, according to the substrate assignments from water exchange kinetics. Within this theoretical framework, the new XFEL findings on S-S can be readily rationalized. Finally, an alternative mechanistic scenario for OO bond formation with ·OH radical near O4 is presented, followed by water binding to the pivot Mn4(III) from O4 side during S-S. This may diversify the substrate sources combined with the Ca channel in water delivery for the forthcoming S-cycle.

摘要

放氧复合结构的构象多态性对光合作用水氧化具有重要意义。采用密度泛函理论计算,我们进一步探讨了 S 态 O5 转移的互变机制,主要集中在多态反应性和自旋跃迁的可能性上。然后,由于互变的不可逆性,证明了 O5 在 S 中不可能发生质子化,这为 O5 在 S 中的质子化状态提供了辅助判断。此外,结构多态性也可以通过涉及 Mn3 配体交换的替代机制来实现,其中一种机制涉及 Mn3(III),这对 S 中底物水交换有意义,尽管对观察到的 EPR 信号的起源没有责任。在水交换过程中,高自旋态占主导地位,有利于铁磁耦合 Mn 中心之间的电子转移。此外,S 中的水交换可以解释低温下进入 S 的初始封闭立方烷结构。关于水氧化,S 和 S 中的结构灵活性和可变性保证了 W2-O5 在 S 中的顺利偶联,这是根据水交换动力学对底物的分配。在这个理论框架下,新的 XFEL 在 S-S 上的发现可以很容易地得到合理化。最后,提出了一种在 O4 附近与·OH 自由基形成 OO 键的替代机制情景,然后在 S-S 期间,水从 O4 侧结合到枢轴 Mn4(III)上。这可能会使底物来源多样化,与即将到来的 S 循环中的 Ca 通道一起输送水。

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