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光系统 II 的 O 演变复合体:来自量子力学/分子力学 (QM/MM)、扩展 X 射线吸收精细结构 (EXAFS) 和飞秒 X 射线晶体学数据的最新见解。

The O-Evolving Complex of Photosystem II: Recent Insights from Quantum Mechanics/Molecular Mechanics (QM/MM), Extended X-ray Absorption Fine Structure (EXAFS), and Femtosecond X-ray Crystallography Data.

机构信息

Department of Chemistry, Yale University , New Haven, Connecticut 06520-8107, United States.

出版信息

Acc Chem Res. 2017 Jan 17;50(1):41-48. doi: 10.1021/acs.accounts.6b00405. Epub 2016 Dec 21.

DOI:10.1021/acs.accounts.6b00405
PMID:28001034
Abstract

Efficient photoelectrochemical water oxidation may open a way to produce energy from renewable solar power. In biology, generation of fuel due to water oxidation happens efficiently on an immense scale during the light reactions of photosynthesis. To oxidize water, photosynthetic organisms have evolved a highly conserved protein complex, Photosystem II. Within that complex, water oxidation happens at the CaMnO inorganic catalytic cluster, the so-called oxygen-evolving complex (OEC), which cycles through storage "S" states as it accumulates oxidizing equivalents and produces molecular oxygen. In recent years, there has been significant progress in understanding the OEC as it evolves through the catalytic cycle. Studies have combined conventional and femtosecond X-ray crystallography with extended X-ray absorption fine structure (EXAFS) and quantum mechanics/molecular mechanics (QM/MM) methods and have addressed changes in protonation states of μ-oxo bridges and the coordination of substrate water through the analysis of ammonia binding as a chemical analog of water. These advances are thought to be critical to understanding the catalytic cycle since protonation states regulate the relative stability of different redox states and the geometry of the OEC. Therefore, establishing the mechanism for substrate water binding and the nature of protonation/redox state transitions in the OEC is essential for understanding the catalytic cycle of O evolution. The structure of the dark-stable S state has been a target for X-ray crystallography for the past 15 years. However, traditional X-ray crystallography has been hampered by radiation-induced reduction of the OEC. Very recently, a revolutionary X-ray free electron laser (XFEL) technique was applied to PSII to reveal atomic positions at 1.95 Å without radiation damage, which brought us closer than ever to establishing the ultimate structure of the OEC in the S state. However, the atom positions in this crystal structure are still not consistent with high-resolution EXAFS spectroscopy, partially due to the poorly resolved oxygen positions next to Mn centers and partial reduction due to extended dark adaptation of the sample. These inconsistencies led to the new models of the OEC with an alternative low oxidation state and raised questions on the protonation state of the cluster, especially the O5 μ-oxo bridge. This Account summarizes the most recent models of the OEC that emerged from QM/MM, EXAFS and femtosecond X-ray crystallography methods. When PSII in the S state is exposed to light, the S state is advanced to the higher oxidation states and eventually binds substrate water molecules. Identifying the substrate waters is of paramount importance for establishing the water-oxidation mechanism but is complicated by a large number of spectroscopically similar waters. Water analogues can, therefore, be helpful because they serve as spectroscopic markers that help to track the motion of the substrate waters. Due to a close structural and electronic similarity to water, ammonia has been of particular interest. We review three competing hypotheses on substrate water/ammonia binding and compile theoretical and experimental evidence to support them. Binding of ammonia as a sixth ligand to Mn4 during the S → S transition seems to satisfy most of the criteria, especially the most compelling recent EPR data on D1-D61A mutated PSII. Such a binding mode suggests delivery of water from the "narrow" channel through a "carousel" rearrangement of waters around Mn4 upon the S → S transition. An alternative hypothesis suggests water delivery through the "large" channel on the Ca side. However, both water delivery paths lead to a similar S structure, seemingly reaching consensus on the nature of the last detectable S-state intermediate in the Kok cycle before O evolution.

摘要

高效的光电化学水氧化可能为利用可再生太阳能来产生能源开辟一条道路。在生物学中,光合作用的光反应过程中,燃料的生成在大规模上高效地发生在水中氧化。为了氧化水,光合生物已经进化出一种高度保守的蛋白质复合物,即光系统 II。在该复合物中,水氧化发生在 CaMnO 无机催化簇,即所谓的氧释放复合物 (OEC) 上,该复合物在积累氧化还原当量并产生分子氧时通过存储“S”状态循环。近年来,人们在理解 OEC 作为催化循环的演变方面取得了重大进展。研究结合了传统和飞秒 X 射线晶体学以及扩展 X 射线吸收精细结构 (EXAFS) 和量子力学/分子力学 (QM/MM) 方法,并通过分析氨结合作为水的化学类似物来解决 μ-氧桥的质子化状态和底物水的配位变化。这些进展被认为对理解催化循环至关重要,因为质子化状态调节不同氧化还原状态的相对稳定性和 OEC 的几何形状。因此,确定底物水结合的机制以及 OEC 中质子化/氧化还原状态转变的性质对于理解 O 演化的催化循环至关重要。暗稳定 S 态的结构一直是过去 15 年来 X 射线晶体学的目标。然而,传统的 X 射线晶体学受到 OEC 辐射诱导还原的阻碍。最近,一种革命性的 X 射线自由电子激光 (XFEL) 技术被应用于 PSII,在没有辐射损伤的情况下以 1.95 Å 的分辨率揭示原子位置,这使我们比以往任何时候都更接近建立 OEC 在 S 态下的最终结构。然而,该晶体结构中的原子位置仍与高分辨率 EXAFS 光谱不一致,部分原因是 Mn 中心附近的氧位置分辨率较低,以及由于样品的暗适应时间延长而导致部分还原。这些不一致导致了具有替代低氧化态的 OEC 的新模型,并提出了关于簇质子化状态的问题,特别是 O5 μ-氧桥。本综述总结了最近从 QM/MM、EXAFS 和飞秒 X 射线晶体学方法中出现的 OEC 模型。当处于 S 态的 PSII 暴露于光时,S 态会被推进到更高的氧化态,并最终结合底物水分子。确定底物水对于建立水氧化机制至关重要,但由于存在大量光谱相似的水而变得复杂。因此,水类似物可以作为光谱标记物来帮助追踪底物水的运动,这非常有帮助。由于与水在结构和电子上具有密切的相似性,氨一直特别受关注。我们综述了三种关于底物水/氨结合的竞争性假说,并汇编了理论和实验证据来支持它们。在 S → S 转变期间,Mn4 上的氨作为第六个配体结合似乎满足了大多数标准,特别是最近关于 D1-D61A 突变 PSII 的最有说服力的 EPR 数据。这种结合模式表明,在 S → S 转变期间,通过 Mn4 周围水的“旋转木马”重排,从“窄”通道输送水。另一种假设表明通过 Ca 侧的“大”通道输送水。然而,两种水输送途径都导致相似的 S 结构,似乎在 Kok 循环中在 O 演化之前达到了对最后一个可检测 S 态中间体性质的共识。

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