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异染色质和核糖体DNA在非整倍体过程中染色体数目和基因组大小变化中的进化意义:以赖氏菊属为例的研究

Evolutionary implications of heterochromatin and rDNA in chromosome number and genome size changes during dysploidy: A case study in Reichardia genus.

作者信息

Siljak-Yakovlev Sonja, Godelle Bernard, Zoldos Vlatka, Vallès Joan, Garnatje Teresa, Hidalgo Oriane

机构信息

Ecologie Systématique Evolution, CNRS, AgroParisTech, Univ. Paris-Sud, Université Paris-Saclay, Orsay, France.

Institut des Sciences de l'Evolution (CNRS-UMR 5554), Université Montpellier II, Place Eugène Bataillon, Montpellier, France.

出版信息

PLoS One. 2017 Aug 9;12(8):e0182318. doi: 10.1371/journal.pone.0182318. eCollection 2017.

Abstract

In this study we showed that constitutive heterochromatin, GC-rich DNA and rDNA are implicated in chromosomal rearrangements during the basic chromosome number changing (dysploidy) in Reichardia genus. This small Mediterranean genus comprises 8-10 species and presents three basic chromosome numbers (x = 9, 8 and 7). To assess genome evolution and differentiation processes, studies were conducted in a dysploid series of six species: R. dichotoma, R. macrophylla and R. albanica (2n = 18), R. tingitana and R. gaditana (2n = 16), and R. picroides (2n = 14). The molecular phylogeny reconstruction comprised three additional species (R. crystallina and R. ligulata, 2n = 16 and R. intermedia, 2n = 14). Our results indicate that the way of dysploidy is descending. During this process, a positive correlation was observed between chromosome number and genome size, rDNA loci number and pollen size, although only the correlation between chromosome number and genome size is still recovered significant once considering the phylogenetic effect. Fluorescent in situ hybridisation also evidenced changes in number, position and organisation of two rDNA families (35S and 5S), including the reduction of loci number and, consequently, reduction in the number of secondary constrictions and nuclear organising regions from three to one per diploid genome. The potential mechanisms of chromosomal and genome evolution, strongly implicating heterochromatin, are proposed and discussed, with particular consideration for Reichardia genus.

摘要

在本研究中,我们表明,组成型异染色质、富含GC的DNA和核糖体DNA(rDNA)在莱氏菊属基本染色体数变化(非整倍性)过程中的染色体重排中发挥作用。这个地中海小属包含8 - 10个物种,具有三个基本染色体数(x = 9、8和7)。为了评估基因组进化和分化过程,我们对一个包含六个物种的非整倍体系列进行了研究:二叉莱氏菊、大叶莱氏菊和阿尔巴尼亚莱氏菊(2n = 18)、廷吉塔纳莱氏菊和加迪塔纳莱氏菊(2n = 16)以及苦味莱氏菊(2n = 14)。分子系统发育重建还包括另外三个物种(晶状莱氏菊和舌状莱氏菊,2n = 16以及中间莱氏菊,2n = 14)。我们的结果表明,非整倍性的方式是递减的。在此过程中,观察到染色体数与基因组大小、rDNA位点数量和花粉大小之间存在正相关,尽管在考虑系统发育效应后,只有染色体数与基因组大小之间的相关性仍然显著。荧光原位杂交也证明了两个rDNA家族(35S和5S)在数量、位置和组织上的变化,包括位点数量的减少,因此,每个二倍体基因组的次级缢痕和核仁组织区数量从三个减少到一个。我们提出并讨论了强烈涉及异染色质的染色体和基因组进化的潜在机制,特别考虑了莱氏菊属。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8284/5549912/34299172e7c6/pone.0182318.g001.jpg

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