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使用A基因对物种进行分子鉴定:利用基因对物种进行分子鉴定。

Molecular identification of species using the A gene: Identificación molecular de especies de utilizando el gen .

作者信息

Sánchez-Herrera K, Sandoval H, Mouniee D, Ramírez-Durán N, Bergeron E, Boiron P, Sánchez-Saucedo N, Rodríguez-Nava V

机构信息

Departamento de Sistemas Biológicos, Universidad Autónoma Metropolitana-Xochimilco, México City, Mexico.

'Bacterial Opportunistic Pathogens and Environment,' UMR, CNRS 5557 Ecologie Microbienne, Université Lyon 1, CNRS ENVL UCBL, Lyon, France.

出版信息

New Microbes New Infect. 2017 Apr 8;19:96-116. doi: 10.1016/j.nmni.2017.03.008. eCollection 2017 Sep.

DOI:10.1016/j.nmni.2017.03.008
PMID:28794885
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5547243/
Abstract

Currently for bacterial identification and classification the gene encoding 16S rRNA is used as a reference method for the analysis of strains of the genus However, it does not have enough polymorphism to differentiate them at the species level. This fact makes it necessary to search for molecular targets that can provide better identification. The A gene (encoding the enzyme superoxide dismutase) has had good results in identifying species of other In this study the A gene is proposed for the identification and differentiation at the species level of the genus We used 41 type species of various collections; a 386 bp fragment of the A gene was amplified and sequenced, and a phylogenetic analysis was performed comparing the genes (1171 bp), 65 (401 bp), A1 (494 bp), B (1195 bp) and B (401 bp). The sequences were aligned using the Clustal X program. Evolutionary trees according to the neighbour-joining method were created with the programs Phylo_win and MEGA 6. The specific variability of the A genus of the genus was analysed. A high phylogenetic resolution, significant genetic variability, and specificity and reliability were observed for the differentiation of the isolates at the species level. The polymorphism observed in the A gene sequence contains variable regions that allow the discrimination of closely related species. The clear specificity, despite its small size, proves to be of great advantage for use in taxonomic studies and clinical diagnosis of the genus

摘要

目前,对于细菌的鉴定和分类,编码16S rRNA的基因被用作分析该属菌株的参考方法。然而,它没有足够的多态性来在种水平上区分它们。这一事实使得有必要寻找能够提供更好鉴定的分子靶点。A基因(编码超氧化物歧化酶)在鉴定其他属的物种方面取得了良好的结果。在本研究中,提出使用A基因对该属进行种水平的鉴定和区分。我们使用了来自各种菌库的41个模式种;扩增并测序了A基因的一个386 bp片段,并进行了系统发育分析,比较了基因(1171 bp)、65(401 bp)、A1(494 bp)、B(1195 bp)和B(401 bp)。使用Clustal X程序对序列进行比对。使用Phylo_win和MEGA 6程序根据邻接法构建进化树。分析了该属A属的特异性变异性。在种水平上对分离株进行区分时,观察到了高系统发育分辨率、显著的遗传变异性以及特异性和可靠性。在A基因序列中观察到的多态性包含可变区,可用于区分密切相关的物种。尽管其大小较小,但其明显的特异性在该属的分类学研究和临床诊断中具有很大优势。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/0ae1eb54051e/gr12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/dc0edf9f17e6/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/949ab13b330f/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/e59961706e4f/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/ab10fa43023d/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/a02b0b0298ff/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/837e1aa47f5a/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/30da9ff27cf2/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/c7bd97be399b/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/263e6a882a33/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/e8441bb9d31d/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/e82c9819effd/gr11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/0ae1eb54051e/gr12.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/dc0edf9f17e6/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/949ab13b330f/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/e59961706e4f/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/ab10fa43023d/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/a02b0b0298ff/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/837e1aa47f5a/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/30da9ff27cf2/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/c7bd97be399b/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/263e6a882a33/gr9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/e8441bb9d31d/gr10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/e82c9819effd/gr11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/15c4/5547243/0ae1eb54051e/gr12.jpg

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