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红球菌新种,从受污染的农田土壤样本中分离得到。

Planococcus ruber sp. nov., isolated from a polluted farmland soil sample.

作者信息

Wang Xu, Wang Zhi, Zhao Xueqiu, Huang Xing, Zhou Yu, Li Wen-Jun

机构信息

State Key Laboratory of Tea Plant Biology and Utilization, Anhui Agricultural University, 130 Changjiang Road West, Hefei 230036, PR China.

Key Laboratory for Microbiological Engineering of Agricultural Environment, Ministry of Agriculture, College of Life Sciences, Nanjing Agricultural University, Nanjing 210095, PR China.

出版信息

Int J Syst Evol Microbiol. 2017 Aug;67(8):2549-2554. doi: 10.1099/ijsem.0.001960. Epub 2017 Aug 15.

Abstract

A pale-red-pigmented bacterial strain, designated CW1T, was isolated from a polluted soil sample in China and was characterized by a polyphasic taxonomic approach. Strain CW1T was Gram-stain-positive (or variable), coccoid, motile by a single polar flagellum and non-spore-forming. Growth was observed at 15-37 °C, but not at 10 °C or 40 °C, at pH 5.0-9.0 and with 0-5 % NaCl (w/v). Phylogenetic analysis showed that strain CW1T belongs to the genus Planococcus. The 16S rRNA gene sequence similarities between CW1T and the four most closely related type strains, Planococcus antarcticus DSM 14505T, Planococcus halocryophilus DSM 24743T, Planomicrobium soli XN13T and Planomicrobium okeanokoites NBRC 12536T were 97.96, 97.83, 97.83 and 97.82 %, respectively. The whole-cell sugars contained galactose, ribose and glucose. The major respiratory quinone was MK-7 followed by MK-8, and the major fatty acids were anteiso-C15 : 0 and anteiso-C17 : 0. The polar lipids consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphoglycolipid. The DNA G+C content was 48.6 mol%. The phylogenetic and chemotaxonomic analyses indicated that strain CW1T belongs unanimously to the genus Planococcus. However, DNA-DNA hybridization showed relatively low relatedness of 21.8 % (DSM 14505T) and 19.6 % (DSM 24743T) with the two most closely related strains of the genus Planococcus. Combined with the genotypic and phenotypic analysis, strain CW1T should represent a novel species in the genus Planococcus, for which the name Planococcus ruber sp. nov. is proposed. The type strain is CW1T (=CCTCC AB 207187T=LMG 24442T).

摘要

从中国一个受污染的土壤样本中分离出一株浅红色色素沉着的细菌菌株,命名为CW1T,并采用多相分类方法对其进行了表征。菌株CW1T革兰氏染色阳性(或可变),呈球状,具单根极鞭毛可运动,不产芽孢。在15-37 °C可观察到生长,但在10 °C或40 °C不生长,在pH 5.0-9.0以及含0-5 %(w/v)NaCl条件下可生长。系统发育分析表明,菌株CW1T属于动性球菌属。CW1T与四个最密切相关的模式菌株,即南极动性球菌DSM 14505T、嗜冷动性球菌DSM 24743T、土壤扁平微球菌XNST13T和海洋扁平微球菌NBRC 12536T的16S rRNA基因序列相似性分别为97.96%、97.83%、97.83%和97.82%。全细胞糖包括半乳糖、核糖和葡萄糖。主要呼吸醌为MK-7,其次是MK-8,主要脂肪酸为anteiso-C15 : 0和anteiso-C17 : 0。极性脂类由双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和磷酸糖脂组成。DNA G+C含量为48.6 mol%。系统发育和化学分类分析表明,菌株CW1T一致属于动性球菌属。然而,DNA-DNA杂交显示,与动性球菌属两个最密切相关的菌株(DSM 14505T和DSM 24743T)的相关性相对较低,分别为21.8%和19.6%。结合基因型和表型分析,菌株CW1T应代表动性球菌属中的一个新物种,为此提出新名称红色动性球菌(Planococcus ruber sp. nov.)。模式菌株为CW1T(=CCTCC AB 207187T=LMG 24442T)。

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