Labonté Jessica M, Lever Mark A, Edwards Katrina J, Orcutt Beth N
Bigelow Laboratory for Ocean Sciences, East BoothbayME, United States.
Department of Marine Biology, Texas A&M University at Galveston, GalvestonTX, United States.
Front Microbiol. 2017 Aug 2;8:1434. doi: 10.3389/fmicb.2017.01434. eCollection 2017.
Microbial communities living in deeply buried sediment may be adapted to long-term energy limitation as they are removed from new detrital energy inputs for thousands to millions of years. However, sediment layers near the underlying oceanic crust may receive inputs from below that influence microbial community structure and/or activity. As part of the Census of Deep Life, we used 16S rRNA gene tag pyrosequencing on DNA extracted from a spectrum of deep sediment-basement interface samples from the subsurface of the Juan de Fuca Ridge flank (collected on IODP Expedition 327) to examine this possible basement influence on deep sediment communities. This area experiences rapid sedimentation, with an underlying basaltic crust that hosts a dynamic flux of hydrothermal fluids that diffuse into the sediment. Chloroflexi sequences dominated tag libraries in all sediment samples, with variation in the abundance of other bacterial groups (e.g., Actinobacteria, Aerophobetes, Atribacteria, Planctomycetes, and Nitrospirae). These variations occur in relation to the type of sediment (clays versus carbonate-rich) and the depth of sample origin, and show no clear connection to the distance from the discharge outcrop or to basement fluid microbial communities. Actinobacteria-related sequences dominated the basalt libraries, but these should be viewed cautiously due to possibilities for imprinting from contamination. Our results indicate that proximity to basement or areas of seawater recharge is not a primary driver of microbial community composition in basal sediment, even though fluids diffusing from basement into sediment may stimulate microbial activity.
生活在深埋沉积物中的微生物群落可能适应长期的能量限制,因为它们与新的碎屑能量输入隔绝了数千至数百万年。然而,靠近下伏洋壳的沉积层可能会受到来自下方的输入影响,进而影响微生物群落结构和/或活性。作为“深层生命普查”的一部分,我们对从胡安德富卡海岭侧翼地下一系列深层沉积物-基底界面样本(在综合大洋钻探计划第327航次采集)中提取的DNA进行了16S rRNA基因标签焦磷酸测序,以研究基底对深层沉积物群落可能产生的这种影响。该区域沉积速度很快,其下伏的玄武岩地壳存在动态的热液流体通量,这些热液会扩散到沉积物中。在所有沉积物样本中,绿弯菌序列在标签文库中占主导地位,其他细菌类群(如放线菌、嗜气菌、阿托菌、浮霉菌和硝化螺旋菌)的丰度存在差异。这些差异与沉积物类型(粘土与富碳酸盐)和样本来源深度有关,与距排放露头的距离或基底流体微生物群落没有明显关联。与放线菌相关的序列在玄武岩文库中占主导地位,但由于可能受到污染印记的影响,对此应谨慎看待。我们的结果表明,即使从基底扩散到沉积物中的流体可能刺激微生物活动,但靠近基底或海水补给区域并非基底沉积物中微生物群落组成的主要驱动因素。