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Modification of 3' Terminal Ends of DNA and RNA Using DNA Polymerase θ Terminal Transferase Activity.利用DNA聚合酶θ末端转移酶活性对DNA和RNA的3'末端进行修饰
Bio Protoc. 2017 Jun 20;7(12). doi: 10.21769/BioProtoc.2330.
2
Polymerase θ is a robust terminal transferase that oscillates between three different mechanisms during end-joining.聚合酶θ是一种强大的末端转移酶,在末端连接过程中会在三种不同机制之间转换。
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DNA Polymerase θ: A Unique Multifunctional End-Joining Machine.DNA聚合酶θ:一种独特的多功能末端连接机器。
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One-step enzymatic modification of RNA 3' termini using polymerase θ.使用聚合酶θ一步酶修饰 RNA 3'末端。
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Mechanism of microhomology-mediated end-joining promoted by human DNA polymerase θ.人DNA聚合酶θ促进的微同源性介导的末端连接机制。
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The helicase domain of Polθ counteracts RPA to promote alt-NHEJ.Polθ的解旋酶结构域可对抗RPA以促进替代性非同源末端连接。
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Sequential requirements for distinct Polθ domains during theta-mediated end joining.在θ介导的末端连接过程中,distinct Polθ 结构域的连续需求。
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Bright fluorescent nucleic acid detection with CRISPR-Cas12a and poly(thymine) templated copper nanoparticles.利用CRISPR-Cas12a和聚胸腺嘧啶模板化铜纳米颗粒进行明亮的荧光核酸检测。
Biol Methods Protoc. 2020 Oct 8;6(1):bpaa020. doi: 10.1093/biomethods/bpaa020. eCollection 2021.
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Synthetic Elaboration of Native DNA by RASS (SENDR).通过RASS对天然DNA进行合成修饰(SENDR)。
ACS Cent Sci. 2020 Oct 28;6(10):1789-1799. doi: 10.1021/acscentsci.0c00680. Epub 2020 Oct 5.

本文引用的文献

1
DNA Polymerase θ: A Unique Multifunctional End-Joining Machine.DNA聚合酶θ:一种独特的多功能末端连接机器。
Genes (Basel). 2016 Sep 21;7(9):67. doi: 10.3390/genes7090067.
2
Polymerase θ is a robust terminal transferase that oscillates between three different mechanisms during end-joining.聚合酶θ是一种强大的末端转移酶,在末端连接过程中会在三种不同机制之间转换。
Elife. 2016 Jun 17;5:e13740. doi: 10.7554/eLife.13740.
3
DNA polymerase θ (POLQ), double-strand break repair, and cancer.DNA聚合酶θ(POLQ)、双链断裂修复与癌症
DNA Repair (Amst). 2016 Aug;44:22-32. doi: 10.1016/j.dnarep.2016.05.003. Epub 2016 May 14.
4
Microhomology-Mediated End Joining: A Back-up Survival Mechanism or Dedicated Pathway?微同源性介导的末端连接:一种备用的生存机制还是特定途径?
Trends Biochem Sci. 2015 Nov;40(11):701-714. doi: 10.1016/j.tibs.2015.08.006. Epub 2015 Oct 1.
5
Mechanism of microhomology-mediated end-joining promoted by human DNA polymerase θ.人DNA聚合酶θ促进的微同源性介导的末端连接机制。
Nat Struct Mol Biol. 2015 Mar;22(3):230-7. doi: 10.1038/nsmb.2961. Epub 2015 Feb 2.
6
Mammalian polymerase θ promotes alternative NHEJ and suppresses recombination.哺乳类聚合酶θ促进替代性非同源末端连接和抑制重组。
Nature. 2015 Feb 12;518(7538):254-7. doi: 10.1038/nature14157. Epub 2015 Feb 2.
7
Mechanism of suppression of chromosomal instability by DNA polymerase POLQ.DNA聚合酶POLQ抑制染色体不稳定性的机制。
PLoS Genet. 2014 Oct 2;10(10):e1004654. doi: 10.1371/journal.pgen.1004654. eCollection 2014 Oct.
8
A Polymerase Theta-dependent repair pathway suppresses extensive genomic instability at endogenous G4 DNA sites.一种依赖于聚合酶θ的修复途径可抑制内源性 G4 DNA 位点的广泛基因组不稳定性。
Nat Commun. 2014;5:3216. doi: 10.1038/ncomms4216.
9
Separation of DNA oligonucleotides using denaturing urea PAGE.使用变性尿素聚丙烯酰胺凝胶电泳分离DNA寡核苷酸。
Methods Mol Biol. 2013;1054:173-85. doi: 10.1007/978-1-62703-565-1_11.
10
Lesion bypass activity of DNA polymerase θ (POLQ) is an intrinsic property of the pol domain and depends on unique sequence inserts.DNA 聚合酶 θ(POLQ)的损伤旁路活性是 pol 结构域的固有特性,取决于独特的序列插入。
J Mol Biol. 2011 Jan 21;405(3):642-52. doi: 10.1016/j.jmb.2010.10.041. Epub 2010 Nov 2.

利用DNA聚合酶θ末端转移酶活性对DNA和RNA的3'末端进行修饰

Modification of 3' Terminal Ends of DNA and RNA Using DNA Polymerase θ Terminal Transferase Activity.

作者信息

Hoang Trung M, Kent Tatiana, Pomerantz Richard T

机构信息

Fels Institute for Cancer Research, Department of Medical Genetics and Molecular Biochemistry, Temple University Lewis Katz School of Medicine, Philadelphia, Pennsylvania, USA.

出版信息

Bio Protoc. 2017 Jun 20;7(12). doi: 10.21769/BioProtoc.2330.

DOI:10.21769/BioProtoc.2330
PMID:28824932
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5560110/
Abstract

DNA polymerase θ (Polθ) is a promiscuous enzyme that is essential for the error-prone DNA double-strand break (DSB) repair pathway called alternative end-joining (alt-EJ). During this form of DSB repair, Polθ performs terminal transferase activity at the 3' termini of resected DSBs via templated and non-templated nucleotide addition cycles. Since human Polθ is able to modify the 3' terminal ends of both DNA and RNA with a wide array of large and diverse ribonucleotide and deoxyribonucleotide analogs, its terminal transferase activity is more useful for biotechnology applications than terminal deoxynucleotidyl transferase (TdT). Here, we present in detail simple methods by which purified human Polθ is utilized to modify the 3' terminal ends of RNA and DNA for various applications in biotechnology and biomedical research.

摘要

DNA聚合酶θ(Polθ)是一种杂乱的酶,对于易错的DNA双链断裂(DSB)修复途径——替代末端连接(alt-EJ)至关重要。在这种形式的DSB修复过程中,Polθ通过模板化和非模板化的核苷酸添加循环在切除的DSB的3'末端进行末端转移酶活性。由于人类Polθ能够用多种大的和不同的核糖核苷酸和脱氧核糖核苷酸类似物修饰DNA和RNA的3'末端,其末端转移酶活性在生物技术应用中比末端脱氧核苷酸转移酶(TdT)更有用。在这里,我们详细介绍了利用纯化的人类Polθ修饰RNA和DNA的3'末端以用于生物技术和生物医学研究中的各种应用的简单方法。