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一种使用生存统计的机器学习方法预测肾移植受者移植物存活率:一项多中心队列研究。

A Machine Learning Approach Using Survival Statistics to Predict Graft Survival in Kidney Transplant Recipients: A Multicenter Cohort Study.

机构信息

Department of Internal Medicine, Dongguk University College of Medicine, Gyeongju, Korea.

Department of Computer Science and Engineering, College of Engineering, Seoul National University, Seoul, Korea.

出版信息

Sci Rep. 2017 Aug 21;7(1):8904. doi: 10.1038/s41598-017-08008-8.

DOI:10.1038/s41598-017-08008-8
PMID:28827646
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5567098/
Abstract

Accurate prediction of graft survival after kidney transplant is limited by the complexity and heterogeneity of risk factors influencing allograft survival. In this study, we applied machine learning methods, in combination with survival statistics, to build new prediction models of graft survival that included immunological factors, as well as known recipient and donor variables. Graft survival was estimated from a retrospective analysis of the data from a multicenter cohort of 3,117 kidney transplant recipients. We evaluated the predictive power of ensemble learning algorithms (survival decision tree, bagging, random forest, and ridge and lasso) and compared outcomes to those of conventional models (decision tree and Cox regression). Using a conventional decision tree model, the 3-month serum creatinine level post-transplant (cut-off, 1.65 mg/dl) predicted a graft failure rate of 77.8% (index of concordance, 0.71). Using a survival decision tree model increased the index of concordance to 0.80, with the episode of acute rejection during the first year post-transplant being associated with a 4.27-fold increase in the risk of graft failure. Our study revealed that early acute rejection in the first year is associated with a substantially increased risk of graft failure. Machine learning methods may provide versatile and feasible tools for forecasting graft survival.

摘要

准确预测肾移植后移植物的存活率受到影响移植物存活的复杂和异质性因素的限制。在这项研究中,我们应用机器学习方法,结合生存统计,建立了新的移植物存活预测模型,其中包括免疫因素以及已知的受者和供者变量。通过对来自 3117 例肾移植受者多中心队列的回顾性数据分析,我们评估了集成学习算法(生存决策树、套袋法、随机森林和岭回归与lasso 回归)的预测能力,并将结果与传统模型(决策树和 Cox 回归)进行了比较。使用传统的决策树模型,移植后 3 个月的血清肌酐水平(截断值为 1.65mg/dl)预测移植物失效率为 77.8%(一致性指数为 0.71)。使用生存决策树模型,一致性指数提高到 0.80,移植后第一年的急性排斥反应与移植物失功风险增加 4.27 倍有关。我们的研究表明,移植后第一年的早期急性排斥反应与移植物失功风险显著增加有关。机器学习方法可为预测移植物存活提供灵活可行的工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/36e59ff5aa79/41598_2017_8008_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/06fdf4a370ea/41598_2017_8008_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/f955b635f36a/41598_2017_8008_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/b87564262629/41598_2017_8008_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/36e59ff5aa79/41598_2017_8008_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/06fdf4a370ea/41598_2017_8008_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/f955b635f36a/41598_2017_8008_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/b87564262629/41598_2017_8008_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbc8/5567098/36e59ff5aa79/41598_2017_8008_Fig4_HTML.jpg

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本文引用的文献

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Superior outcomes of kidney transplantation compared with dialysis: An optimal matched analysis of a national population-based cohort study between 2005 and 2008 in Korea.肾移植与透析相比的更好结局:2005年至2008年韩国一项基于全国人群队列研究的最佳匹配分析
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Relationship between eGFR Decline and Hard Outcomes after Kidney Transplants.
使用基于剪切波弹性成像的可解释模型预测肾移植受者的不良结局
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Survival analysis using machine learning in transplantation: a practical introduction.移植中使用机器学习的生存分析:实用入门
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A novel method to predict white blood cells after kidney transplantation based on machine learning.一种基于机器学习预测肾移植后白细胞的新方法。
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The Role of Vitamin D Metabolism Genes and Their Genomic Background in Shaping Cyclosporine A Dosage Parameters after Kidney Transplantation.维生素D代谢基因及其基因组背景在肾移植后环孢素A剂量参数形成中的作用。
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Nephrology: a flourishing field with plentiful emerging topics.肾脏病学:一个蓬勃发展且有着众多新兴主题的领域。
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