Lee Tamsin E, Bowman Clive, Roberts David L
Mathematical Institute, University of Oxford, Oxford, UK.
Durrell Institute of Conservation and Ecology, School of Anthropology and Conservation, University of Kent at Canterbury, UK.
PeerJ. 2017 Aug 11;5:e3663. doi: 10.7717/peerj.3663. eCollection 2017.
Extinction models vary in the information they require, the simplest considering the rate of certain sightings only. More complicated methods include uncertain sightings and allow for variation in the reliability of uncertain sightings. Generally extinction models require expert opinion, either as a prior belief that a species is extinct, or to establish the quality of a sighting record, or both. Is this subjectivity necessary? We present two models to explore whether the individual quality of sightings, judged by experts, is strongly informative of the probability of extinction: the 'quality breakpoint method' and the 'quality as variance method'. For the first method we use the Barbary lion as an exemplar. For the second method we use the Barbary lion, Alaotra grebe, Jamaican petrel and Pohnpei starling as exemplars. The 'quality breakpoint method' uses certain and uncertain sighting records, and the quality of uncertain records, to establish whether a change point in the rate of sightings can be established using a simultaneous Bayesian optimisation with a non-informative prior. For the Barbary lion, there is a change in subjective quality of sightings around 1930. Unexpectedly sighting quality increases after this date. This suggests that including quality scores from experts can lead to irregular effects and may not offer reliable results. As an alternative, we use quality as a measure of variance around the sightings, not a change in quality. This leads to predictions with larger standard deviations, however the results remain consistent across any prior belief of extinction. Nonetheless, replacing actual quality scores with random quality scores showed little difference, inferring that the quality scores from experts are superfluous. Therefore, we deem the expensive process of obtaining pooled expert estimates as unnecessary, and even when used we recommend that sighting data should have minimal input from experts in terms of assessing the sighting quality at a fine scale. Rather, sightings should be classed as certain or uncertain, using a framework that is as independent of human bias as possible.
灭绝模型在所需信息方面各不相同,最简单的模型仅考虑特定目击事件的发生率。更复杂的方法则纳入了不确定的目击事件,并考虑到不确定目击事件可靠性的变化。一般来说,灭绝模型需要专家意见,既可以作为关于某个物种已灭绝的先验信念,也可以用于确定目击记录的质量,或者两者皆需。这种主观性是否必要呢?我们提出了两个模型,以探究由专家判断的目击事件个体质量是否能有力地说明灭绝概率:“质量断点法”和“质量作为方差法”。对于第一种方法,我们以巴巴里狮为例。对于第二种方法,我们以巴巴里狮、阿劳特拉䴙䴘、牙买加海燕和波纳佩岛辉椋鸟为例。“质量断点法”利用确定和不确定的目击记录以及不确定记录的质量,通过使用非信息性先验的同时贝叶斯优化来确定是否能确定目击发生率的变化点。对于巴巴里狮,1930年左右目击事件的主观质量出现了变化。出乎意料的是,此后目击质量有所提高。这表明纳入专家的质量评分可能会产生不规则影响,且可能无法提供可靠结果。作为一种替代方法,我们将质量用作目击事件周围方差的度量,而非质量的变化。这导致预测的标准差更大,然而无论对灭绝的任何先验信念如何,结果都保持一致。尽管如此,用随机质量评分取代实际质量评分显示差异不大,这意味着专家的质量评分是多余的。因此,我们认为获取汇总专家估计的昂贵过程是不必要的,而且即使使用了专家估计,我们也建议在精细尺度评估目击质量方面,目击数据应尽量减少专家的参与。相反,应使用尽可能独立于人为偏差的框架将目击事件分为确定或不确定两类。