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非洲缝叶莺(扇尾莺科:阿氏缝叶莺属)的系统分类学与生物地理学,并对分析异质数据时贝叶斯分支长度先验的选择进行评论。

The systematics and biogeography of African tailorbirds (Cisticolidae: Artisornis) with comment on the choice of Bayesian branch-length prior when analyzing heterogeneous data.

作者信息

Bowie Rauri C K, Pasquet Eric, McEntee Jay P, Njilima Fadhili, Fjeldså Jon

机构信息

Museum of Vertebrate Zoology and Department of Integrative Biology, 3101 Valley Life Science Building, University of California, Berkeley, CA 94720-3160, USA.

UMR7205 CNRS, «Origine, Structure et Evolution de la Biodiversité», Muséum National d'Histoire Naturelle, 55 Rue Buffon, 75005 Paris, France; UMS2700 CNRS, «Outils et Méthodes de la Systématique Intégrative», Muséum National d'Histoire Naturelle, 43, rue Cuvier, 75005 Paris, France.

出版信息

Mol Phylogenet Evol. 2018 Jan;118:172-183. doi: 10.1016/j.ympev.2017.08.011. Epub 2017 Aug 20.

DOI:10.1016/j.ympev.2017.08.011
PMID:28834700
Abstract

The Long-billed Tailorbird (Artisornis moreaui), one of Africa's rarest birds, has a strikingly disjunct distribution, the origin of which has long puzzled biogeographers. One small population (subspecies moreaui) occurs in sub-montane forest in the East Usambara Mountains, a sky island near the coast of northern Tanzania, and another (subspecies sousae) on Serra Jeci in northwestern Mozambique, 950km away. The African Tailorbird, the putative sister-species of Long-billed Tailorbird, also occurs in the East Usambara Mountains and on Serra Jeci, but in addition occupies all the Eastern Arc Mountain forests between these disjunct sites. Stuart (1981) hypothesized that the two tailorbird distributions could be explained by strong ecological competition, with African Tailorbird populations having eliminated Long-billed Tailorbird populations via competitive exclusion in montane forests between the East Usambara and Serra Jeci. If such competitive exclusion explains these geographic distributions, the co-occurrence of the two species in the East Usambara and at Serra Jeci may be ephemeral, with the status of Long-billed Tailorbird especially in doubt. We sought to (1) determine whether the two species of African tailorbirds are indeed sister-species, and (2) test predictions from Stuart's (1981) competitive exclusion hypothesis using genetic data. Phylogenetic analyses of our seven gene dataset (3 mtDNA, 4 introns; 4784bp) indeed place these two species together in the genus Artisornis. Instead of finding shallow divergence among African Tailorbird populations and deep divergence between Long-billed Tailorbird populations as expected from Stuart's hypothesis, we recover deep genetic divergence and geographic structure among populations of both tailorbird species. This result is consistent with long-term co-existence of the two species at East Usambara and Serra Jeci. Observational data from both the East Usambara and Serra Jeci suggest that the two species have diverged in use of forest canopy strata. From a conservation standpoint, our results suggest that extinction of the Long-billed Tailorbird as a function of competition with African Tailorbird is highly unlikely, and should not be viewed as imminent. Threats to its survival are instead anthropogenic, and conservation measures should take this into account. Finally, our empirical results suggest that mis-specification of the branch-length prior in Bayesian analyses of mitochondrial DNA data can have a profound effect on the overall tree-length (sum of branch-lengths), whereas the topology and support values tend to remain more stable. In contrast, mis-specification of the branch-length prior had a lesser impact on all aspects of the nuclear-only DNA analyses. This problem may be exacerbated when mitochondrial and nuclear DNA analyses are combined in a total evidence approach.

摘要

长嘴缝叶莺(Artisornis moreaui)是非洲最稀有的鸟类之一,其分布极为分散,这一现象的起源长期以来一直困扰着生物地理学家。一小群(亚种moreaui)出现在东乌桑巴拉山脉的亚山地森林中,该山脉是坦桑尼亚北部海岸附近的一个天空岛,另一小群(亚种sousae)则位于950公里外的莫桑比克西北部的塞拉热西。非洲缝叶莺被认为是长嘴缝叶莺的姐妹物种,也分布在东乌桑巴拉山脉和塞拉热西,但除此之外,它还占据了这两个分散地点之间的所有东弧山地森林。斯图尔特(1981年)推测,这两种缝叶莺的分布可以用强烈的生态竞争来解释,即非洲缝叶莺种群通过在东乌桑巴拉和塞拉热西之间的山地森林中的竞争排斥,消灭了长嘴缝叶莺种群。如果这种竞争排斥解释了这些地理分布,那么这两个物种在东乌桑巴拉和塞拉热西的共存可能是短暂的,长嘴缝叶莺的状况尤其令人怀疑。我们试图(1)确定这两种非洲缝叶莺是否确实是姐妹物种,以及(2)使用遗传数据检验斯图尔特(1981年)的竞争排斥假说的预测。对我们的七个基因数据集(3个线粒体DNA,4个内含子;4784碱基对)进行的系统发育分析确实将这两个物种归入了Artisornis属。我们没有像斯图尔特假说所预期的那样,在非洲缝叶莺种群之间发现浅度分化,而在长嘴缝叶莺种群之间发现深度分化,而是在两种缝叶莺的种群之间都发现了深度遗传分化和地理结构。这一结果与这两个物种在东乌桑巴拉和塞拉热西的长期共存是一致的。来自东乌桑巴拉和塞拉热西的观测数据表明,这两个物种在森林冠层的利用上已经出现了分化。从保护的角度来看,我们的结果表明,长嘴缝叶莺因与非洲缝叶莺竞争而灭绝的可能性极小,不应被视为迫在眉睫。相反,其生存威胁是人为造成的,保护措施应考虑到这一点。最后,我们的实证结果表明,在贝叶斯线粒体DNA数据分析中,分支长度先验的错误设定可能会对整个树长(分支长度之和)产生深远影响,而拓扑结构和支持值往往更稳定。相比之下,分支长度先验的错误设定对仅核DNA分析的各个方面影响较小。当线粒体和核DNA分析以总证据法结合时,这个问题可能会加剧。

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