Soares Alexei S, Caspar Donald L D
Photon Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.
J Struct Biol. 2017 Dec;200(3):213-218. doi: 10.1016/j.jsb.2017.08.004. Epub 2017 Aug 31.
X-ray crystallographic measurement of the number of solvent electrons in the unit cell of a protein crystal equilibrated with aqueous solutions of different densities provides information about preferential hydration in the crystalline state. Room temperature and cryo-cooled rhombohedral insulin crystals were equilibrated with 1.2M trehalose to study the effect of lowered water activity. The native and trehalose soaked crystals were isomorphous and had similar structures. Including all the low resolution data, the amplitudes of the structure factors were put on an absolute scale (in units of electrons per asymmetric unit) by constraining the integrated number of electrons inside the envelope of the calculated protein density map to equal the number deduced from the atomic model. This procedure defines the value of F(000), the amplitude at the origin of the Fourier transform, which is equal to the total number of electrons in the asymmetric unit (i.e. protein plus solvent). Comparison of the F(000) values for three isomorphous pairs of room temperature insulin crystals, three with trehalose and three without trehalose, indicates that 75±12 electrons per asymmetric unit were added to the crystal solvent when soaked in 1.2M trehalose. If all the water in the crystal were available as solvent for the trehalose, 304 electrons would have been added. Thus, the co-solvent accessible volume is one quarter of the total water in the crystal. Determination of the total number of electrons in a protein crystal is an essential first step for mapping the average density distribution of the disordered solvent.
通过对与不同密度水溶液平衡的蛋白质晶体晶胞中溶剂电子数量进行X射线晶体学测量,可提供有关晶体状态下优先水化的信息。将室温及低温冷却的菱形胰岛素晶体与1.2M海藻糖平衡,以研究降低水活性的影响。天然晶体和经海藻糖浸泡的晶体是同晶型的,且结构相似。包括所有低分辨率数据在内,通过将计算出的蛋白质密度图包络内电子的积分数量约束为等于从原子模型推导得出的数量,将结构因子的振幅置于绝对标度(以每个不对称单位的电子数为单位)上。此过程定义了傅里叶变换原点处的振幅F(000)的值,它等于不对称单位中的电子总数(即蛋白质加溶剂)。对三对同晶型的室温胰岛素晶体(三对含海藻糖,三对不含海藻糖)的F(000)值进行比较表明,浸泡在1.2M海藻糖中时,每个不对称单位的晶体溶剂中添加了75±12个电子。如果晶体中的所有水都可作为海藻糖的溶剂,那么将会添加304个电子。因此,共溶剂可及体积是晶体中总水量的四分之一。确定蛋白质晶体中的电子总数是绘制无序溶剂平均密度分布的关键第一步。