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用于描述豹纹石斑鱼(Plectropomus leopardus)营养生物节律的组学方法。

Trans-omics approaches used to characterise fish nutritional biorhythms in leopard coral grouper (Plectropomus leopardus).

机构信息

RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.

National Fishery Research Institute of Fishery Sciences, Fishery Research and Education Organization, 2-12-4, Fukuura, Kanazawa-ku, Yokohama, 230-0045, Japan.

出版信息

Sci Rep. 2017 Aug 24;7(1):9372. doi: 10.1038/s41598-017-09531-4.

Abstract

Aquaculture is now a major supplier of fish, and has the potential to be a major source of protein in the future. Leopard coral groupers are traded in Asian markets as superior fish, and production via aquaculture has commenced. As feeding efficiency is of great concern in aquaculture, we sought to examine the metabolism of leopard coral groupers using trans-omics approaches. Metabolic mechanisms were comprehensively analysed using transcriptomic and metabolomic techniques. This study focused on the dynamics of muscular metabolites and gene expression. The omics data were discussed in light of circadian rhythms and fasting/feeding. The obtained data suggest that branched-chain amino acids played a role in energy generation in the fish muscle tissues during fasting. Moreover, glycolysis, TCA cycles, and purine metabolic substances exhibited circadian patterns, and gene expression also varied. This study is the first step to understanding the metabolic mechanisms of the leopard coral grouper.

摘要

水产养殖现在是鱼类的主要供应者,并且将来有可能成为蛋白质的主要来源。豹纹石斑鱼在亚洲市场作为优质鱼类进行交易,并且已经开始进行水产养殖。由于水产养殖中对饲料效率非常关注,我们试图使用组学方法来研究豹纹石斑鱼的新陈代谢。使用转录组学和代谢组学技术全面分析了代谢机制。本研究重点研究了肌肉代谢物和基因表达的动态变化。组学数据是根据昼夜节律和禁食/摄食来讨论的。研究结果表明,在禁食期间,支链氨基酸在鱼类肌肉组织的能量生成中发挥作用。此外,糖酵解、三羧酸循环和嘌呤代谢物质表现出昼夜节律模式,基因表达也发生变化。这项研究是了解豹纹石斑鱼代谢机制的第一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bd5/5570933/aa7b573240ad/41598_2017_9531_Fig1_HTML.jpg

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