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厌氧消化池中,rRNA操纵子拷贝数的微生物功能特性随有机负荷增加而增强。

Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters.

作者信息

Wu Linwei, Yang Yunfeng, Chen Si, Jason Shi Zhou, Zhao Mengxin, Zhu Zhenwei, Yang Sihang, Qu Yuanyuan, Ma Qiao, He Zhili, Zhou Jizhong, He Qiang

机构信息

State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.

Institute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, USA.

出版信息

ISME J. 2017 Dec;11(12):2874-2878. doi: 10.1038/ismej.2017.135. Epub 2017 Aug 25.

DOI:10.1038/ismej.2017.135
PMID:28841202
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5702740/
Abstract

The ecological concept of the r-K life history strategy is widely applied in macro-ecology to characterize functional traits of taxa. However, its adoption in microbial communities is limited, owing to the lack of a measureable, convenient functional trait for classification. In this study, we performed an experiment of stepwise organic amendments in triplicate anaerobic digesters. We found that high resource availability significantly favored microbial r-strategists such as Bacillus spp. Incremental resource availability heightened average rRNA operon copy number of microbial community, resulting in a strong, positive correlation (r>0.74, P<0.008). This study quantifies how resource availability manipulations influence microbial community composition and supports the idea that rRNA operon copy number is an ecologically meaningful trait which reflects resource availability.

摘要

r-K生活史策略的生态概念在宏观生态学中被广泛应用于描述分类单元的功能特征。然而,由于缺乏可测量、方便的功能特征用于分类,它在微生物群落中的应用受到限制。在本研究中,我们在三个重复的厌氧消化器中进行了逐步添加有机物质的实验。我们发现高资源可用性显著有利于微生物r策略者,如芽孢杆菌属。资源可用性的增加提高了微生物群落的平均rRNA操纵子拷贝数,导致了强正相关(r>0.74,P<0.008)。本研究量化了资源可用性操纵如何影响微生物群落组成,并支持rRNA操纵子拷贝数是反映资源可用性的具有生态意义的特征这一观点。

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本文引用的文献

1
Exploiting rRNA operon copy number to investigate bacterial reproductive strategies.利用 rRNA 操纵子拷贝数来研究细菌的生殖策略。
Nat Microbiol. 2016 Sep 12;1(11):16160. doi: 10.1038/nmicrobiol.2016.160.
2
Decreases in average bacterial community rRNA operon copy number during succession.演替过程中平均细菌群落rRNA操纵子拷贝数的减少。
ISME J. 2016 May;10(5):1147-56. doi: 10.1038/ismej.2015.191. Epub 2015 Nov 13.
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Long-term forest soil warming alters microbial communities in temperate forest soils.长期森林土壤增温改变了温带森林土壤中的微生物群落。
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rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development.rrnDB:用于解释细菌和古细菌中rRNA基因丰度的改进工具以及未来发展的新基础。
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GeoChip 4: a functional gene-array-based high-throughput environmental technology for microbial community analysis.GeoChip 4:一种基于功能基因芯片的高通量环境微生物群落分析技术。
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