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FindFoci: a focus detection algorithm with automated parameter training that closely matches human assignments, reduces human inconsistencies and increases speed of analysis.FindFoci:一种具有自动参数训练功能的焦点检测算法,该算法与人工标注紧密匹配,减少了人工标注的不一致性并提高了分析速度。
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Regulation of sister chromosome cohesion by the replication fork tracking protein SeqA.复制叉追踪蛋白 SeqA 对姐妹染色单体黏连的调控。
PLoS Genet. 2013;9(8):e1003673. doi: 10.1371/journal.pgen.1003673. Epub 2013 Aug 22.
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Measuring mRNA copy number in individual Escherichia coli cells using single-molecule fluorescent in situ hybridization.利用单分子荧光原位杂交技术测量单个大肠杆菌细胞中的 mRNA 拷贝数。
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Organization and segregation of bacterial chromosomes.细菌染色体的组织和分离。
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High-throughput, subpixel precision analysis of bacterial morphogenesis and intracellular spatio-temporal dynamics.高通量、亚像素精度分析细菌形态发生和细胞内时空动态。
Mol Microbiol. 2011 May;80(3):612-27. doi: 10.1111/j.1365-2958.2011.07579.x. Epub 2011 Mar 17.
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Escherichia coli sister chromosome separation includes an abrupt global transition with concomitant release of late-splitting intersister snaps.大肠杆菌姐妹染色单体分离包括一个突然的全局转变,同时释放后期分裂的姐妹连接点。
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Assaying chromosome pairing by FISH analysis of spread Saccharomyces cerevisiae nuclei.
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Tracking of controlled Escherichia coli replication fork stalling and restart at repressor-bound DNA in vivo.体内追踪受控大肠杆菌复制叉在阻遏物结合的DNA处的停滞与重启
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利用荧光原位杂交技术对大肠杆菌染色体进行多位点成像

Multilocus Imaging of the E. coli Chromosome by Fluorescent In Situ Hybridization.

作者信息

Visser Bryan J, Joshi Mohan C, Bates David

机构信息

Integrative Molecular and Biomedical Sciences, Baylor College of Medicine, Houston, TX, USA.

Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.

出版信息

Methods Mol Biol. 2017;1624:213-226. doi: 10.1007/978-1-4939-7098-8_16.

DOI:10.1007/978-1-4939-7098-8_16
PMID:28842886
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7000180/
Abstract

Fluorescence in situ hybridization (FISH) is a widely used technique to detect and localize specific DNA or RNA sequences in cells. Although supplanted in many ways by fluorescently labeled DNA binding proteins, FISH remains the only cytological method to examine many genetic loci at once (up to six), and can be performed in any cell type and genotype. These advantages have proved invaluable in studying the spatial relationships between chromosome regions and the dynamics of chromosome segregation in bacteria. A detailed protocol for DNA FISH in E. coli is described.

摘要

荧光原位杂交(FISH)是一种广泛应用于检测和定位细胞中特定DNA或RNA序列的技术。尽管在许多方面已被荧光标记的DNA结合蛋白所取代,但FISH仍然是唯一能同时检测多个(多达六个)基因位点的细胞学方法,并且可在任何细胞类型和基因型中进行。这些优势在研究细菌染色体区域之间的空间关系以及染色体分离动态方面已被证明具有极高的价值。本文描述了大肠杆菌中DNA FISH的详细实验方案。