Timr Štěpán, Pleskot Roman, Kadlec Jan, Kohagen Miriam, Magarkar Aniket, Jungwirth Pavel
Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, 16610 Prague 6, Czech Republic.
Institute of Experimental Botany, Czech Academy of Sciences, Rozvojová 263, 16502 Prague 6, Czech Republic.
ACS Cent Sci. 2017 Aug 23;3(8):868-874. doi: 10.1021/acscentsci.7b00210. Epub 2017 Jul 24.
Recoverin is a neuronal calcium sensor involved in vision adaptation that reversibly associates with cellular membranes via its calcium-activated myristoyl switch. While experimental evidence shows that the myristoyl group significantly enhances membrane affinity of this protein, molecular details of the binding process are still under debate. Here, we present results of extensive molecular dynamics simulations of recoverin in the proximity of a phospholipid bilayer. We capture multiple events of spontaneous membrane insertion of the myristoyl moiety and confirm its critical role in the membrane binding. Moreover, we observe that the binding strongly depends on the conformation of the N-terminal domain. We propose that a suitable conformation of the N-terminal domain can be stabilized by the disordered C-terminal segment or by binding of the target enzyme, i.e., rhodopsin kinase. Finally, we find that the presence of negatively charged lipids in the bilayer stabilizes a physiologically functional orientation of the membrane-bound recoverin.
恢复蛋白是一种参与视觉适应的神经元钙传感器,它通过其钙激活的肉豆蔻酰开关与细胞膜可逆地结合。虽然实验证据表明肉豆蔻酰基团显著增强了该蛋白的膜亲和力,但结合过程的分子细节仍存在争议。在此,我们展示了在磷脂双层附近对恢复蛋白进行广泛分子动力学模拟的结果。我们捕捉到了肉豆蔻酰部分自发插入膜的多个事件,并证实了其在膜结合中的关键作用。此外,我们观察到结合强烈依赖于N端结构域的构象。我们提出,N端结构域的合适构象可以通过无序的C端片段或通过靶酶即视紫红质激酶的结合来稳定。最后,我们发现双层中带负电荷的脂质的存在稳定了膜结合恢复蛋白的生理功能取向。